Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00035043 |
| length | 1308 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 11 |
| gene id | XLOC_017703 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 50015470 ~ 50044755 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006325 | chromatin organization | biological_process |
| GO:0034720 | histone H3-K4 demethylation | biological_process |
| GO:0070544 | histone H3-K36 demethylation | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0045668 | negative regulation of osteoblast differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0051213 | dioxygenase activity | molecular_function |
| GO:0032453 | histone demethylase activity (H3-K4 specific) | molecular_function |
| GO:0051864 | histone demethylase activity (H3-K36 specific) | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041008-221 | Predicted to enable histone demethylase activity (H3-K36 specific); histone demethylase activity (H3-K4 specific); and iron ion binding activity. Predicted to be involved in histone lysine demethylation; negative regulation of osteoblast differentiation; and negative regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human RIOX1 (ribosomal oxygenase 1). |
| ensembl_id | ENSDART00000148495 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036733 | lncRNA | upstream | 555932 | 49450993 ~ 49459757 (+) | True | XLOC_017700 |
| TCONS_00036731 | lncRNA | upstream | 664134 | 49190082 ~ 49351555 (+) | True | XLOC_017698 |
| TCONS_00036732 | lncRNA | upstream | 708086 | 49306976 ~ 49307603 (+) | True | XLOC_017699 |
| TCONS_00036730 | lncRNA | upstream | 711083 | 49189994 ~ 49304606 (+) | False | XLOC_017698 |
| TCONS_00036729 | lncRNA | upstream | 759513 | 49189898 ~ 49256176 (+) | False | XLOC_017698 |
| TCONS_00036734 | lncRNA | downstream | 172629 | 50210097 ~ 50295629 (+) | False | XLOC_017706 |
| TCONS_00036735 | lncRNA | downstream | 172629 | 50210097 ~ 50298343 (+) | True | XLOC_017706 |
| TCONS_00035050 | lncRNA | downstream | 210624 | 50248092 ~ 50249827 (+) | True | XLOC_017707 |
| TCONS_00036736 | lncRNA | downstream | 291760 | 50329228 ~ 50332544 (+) | False | XLOC_017708 |
| TCONS_00036737 | lncRNA | downstream | 291874 | 50329342 ~ 50332544 (+) | False | XLOC_017708 |
| TCONS_00035041 | mRNA | upstream | 87259 | 49895220 ~ 49928430 (+) | True | XLOC_017702 |
| TCONS_00035040 | mRNA | upstream | 211092 | 49787584 ~ 49804597 (+) | True | XLOC_017701 |
| TCONS_00035039 | mRNA | upstream | 211397 | 49787584 ~ 49804292 (+) | False | XLOC_017701 |
| TCONS_00035038 | mRNA | upstream | 213706 | 49787584 ~ 49801983 (+) | False | XLOC_017701 |
| TCONS_00035037 | mRNA | upstream | 213754 | 49787584 ~ 49801935 (+) | False | XLOC_017701 |
| TCONS_00035045 | mRNA | downstream | 14648 | 50052116 ~ 50086093 (+) | False | XLOC_017704 |
| TCONS_00035046 | mRNA | downstream | 15159 | 50052627 ~ 50089898 (+) | False | XLOC_017704 |
| TCONS_00035047 | mRNA | downstream | 24422 | 50061890 ~ 50086095 (+) | True | XLOC_017704 |
| TCONS_00035048 | mRNA | downstream | 77867 | 50115335 ~ 50198207 (+) | False | XLOC_017705 |
| TCONS_00035049 | mRNA | downstream | 147466 | 50184934 ~ 50198207 (+) | True | XLOC_017705 |
| TCONS_00035033 | other | upstream | 982571 | 49033004 ~ 49033118 (+) | True | XLOC_017695 |
| TCONS_00035023 | other | upstream | 1402253 | 48613321 ~ 48613436 (+) | True | XLOC_017687 |
| TCONS_00035022 | other | upstream | 1403319 | 48612257 ~ 48612370 (+) | True | XLOC_017686 |
| TCONS_00035021 | other | upstream | 1404379 | 48611195 ~ 48611310 (+) | True | XLOC_017685 |
| TCONS_00035020 | other | upstream | 1405222 | 48610352 ~ 48610467 (+) | True | XLOC_017684 |
| TCONS_00035066 | other | downstream | 1174464 | 51211932 ~ 51212048 (+) | True | XLOC_017717 |
| TCONS_00035075 | other | downstream | 1478734 | 51516202 ~ 51516318 (+) | True | XLOC_017723 |
| TCONS_00035099 | other | downstream | 2882388 | 52919856 ~ 52919986 (+) | True | XLOC_017742 |
