XLOC_017706


Basic Information

Item Value
gene id XLOC_017706
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 50210097 ~ 50298343 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036734
TTTTAGAAGAGTTTCCGGTTTAATCAGCCTAACTCAAATCTGCACGTCATCTGAATTCAACAACTGACTCAACTGCTACACGGAACAGTGGATTCTGCTTGCATGCACTCACTTTAGACCAAAATATCTGAACAGAAGAACAAAGTCTGGAGGAGGAGAGCGAAACGCAGGCCAGACGCTGATAATGGAGGCGCAGCTGTTTCTCCTCAACTGGAAATACGGCGGCTTGAAAAGAAACTCAAGGATGAATTGGGGTGAGTGATctaatgtgcatttatttgcatttgacCGGCGACTGATGAGCAGAACGTCCTGAAGCTCCCTCTGAAGATTTGCACCTATTTACAGAAATAGCATCTTTTTTTGGGTCATTtacgcaaaaataaaaaaataaaaatgtttcaaattagaatctttttatttcaaatgtgtagtaaatattatttgcagtttattaaataagaaatgtttttacTCA
>TCONS_00036735
TTTTAGAAGAGTTTCCGGTTTAATCAGCCTAACTCAAATCTGCACGTCATCTGAATTCAACAACTGACTCAACTGCTACACGGAACAGTGGATTCTGCTTGCATGCACTCACTTTAGACCAAAATATCTGAACAGAAGAACAAAGTCTGGAGGAGGAGAGCGAAACGCAGGCCAGACGCTGATAATGGAGGCGCAGCTGTTTCTCCTCAACTGGAAATACGGCGGCTTGAAAAGAAACTCAAGGATGAATTGGGTCAATGCAGATTCTGCTTTTCTCCGGATTCAAAGGCATAATGAGGGAACGAGTGCCACTGAAAAGCTTCAgatgaaagaagaagaaaaaacagcaTAGAACTGAAAGATGACTTTATAGGCAGACACGCTCAACATGTCAACATGAAACACCGCTATTGAAATGTGATGTATTTTACTAGTAAAACAGGATATTCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036734 False 478 lncRNA 0.38 2 50210097 50295629
TCONS_00036735 True 451 lncRNA 0.42 3 50210097 50298343

Neighbor

gene id symbol gene type direction distance location
XLOC_017705 slc24a4b coding upstream 11890 50115335 ~ 50198207 (+)
XLOC_017704 cpsf2 coding upstream 120199 50052116 ~ 50089898 (+)
XLOC_017703 riox1 coding upstream 165342 50015470 ~ 50044755 (+)
XLOC_017702 ints9 coding upstream 281667 49895220 ~ 49928430 (+)
XLOC_017701 HMBOX1 coding upstream 405500 49787584 ~ 49804597 (+)
XLOC_017708 NA coding downstream 30885 50329228 ~ 50332544 (+)
XLOC_017709 NA coding downstream 153126 50451469 ~ 50504264 (+)
XLOC_017710 fut8b coding downstream 351800 50650143 ~ 50740404 (+)
XLOC_017711 gphnb coding downstream 554013 50852356 ~ 50999404 (+)
XLOC_017712 mpp5b coding downstream 708019 51006362 ~ 51081372 (+)
XLOC_017700 NA non-coding upstream 750340 49450993 ~ 49459757 (+)
XLOC_017698 NA non-coding upstream 858542 49189737 ~ 49351555 (+)
XLOC_017699 NA non-coding upstream 902494 49306976 ~ 49307603 (+)
XLOC_017695 LO017960.1 non-coding upstream 1176979 49033004 ~ 49033118 (+)
XLOC_017694 NA non-coding upstream 1182824 49003776 ~ 49027273 (+)
XLOC_017714 AL928824.2 non-coding downstream 764531 51062874 ~ 51156101 (+)
XLOC_017716 NA non-coding downstream 870569 51168912 ~ 51173504 (+)
XLOC_017719 CU660013.4 non-coding downstream 1091558 51389901 ~ 51391289 (+)

Expression


Co-expression Network