XLOC_018925 (anapc13)


Basic Information

Item Value
gene id XLOC_018925
gene name anapc13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 24536233 ~ 24537061 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037599
GATATGTCGTCATCAGAAAGCGACATAACAACAAACGGCAGCGCTGGGAACTAGACTACACAGCGTTTCTGCGTCGTTTGATCTGTCGACTGTGTGTTGCCGTGTAAGCGAATCATGGACAGTGAAGTGCAGAGAGACGGACGAGTTCTTGATCTAACAGATGATGCCTGGAGAGAGGACAGACTGCCATACGAGGATGTGACGATCCCACTGAGTGAACTTCCTGAAGCTGAGCAGGACAATGGTGGGTCGACAGAGTCCGTCAAAGAGCAAGAGATGAAGTGGTCAGATCTCGCCCTGCAGAGTTTGCATGAAAACACCCCAAATGTCGGCACTTAGATCAGAAGCTTCTCTTATCCTCTCTGACTGATTCTTCACCGTGTGTTTGTCTGCAATTTGGGTCCCGGATCCAAGATTTATAAAATAACTGACTCATGTATTATTGTATTGGTGTTTCATCGTTttgatataaattatttaataaaatgatacACATTT
>TCONS_00037600
ATAACAACAAACGGCAGCGCTGGGAACTAGACTACACAGCGAATCATGGACAGTGAAGTGCAGAGAGACGGACGAGTTCTTGATCTAACAGATGATGCCTGGAGAGAGGACAGACTGCCATACGAGGATGTGACGATCCCACTGAGTGAACTTCCTGAAGCTGAGCAGGACAATGGTGGGTCGACAGAGTCCGTCAAAGAGCAAGAGATGAAGTGGTCAGATCTCGCCCTGCAGAGTTTGCATGAAAACACCCCAAATGTCGGCACTTAGATCAGAAGCTTCTCTTATCCTCTCTGACTGATTCTTCACCGTGTGTTTGTCTGCAATTTGGGTCCCGGATCCAAGATTTATAAAATAACTGACTCATGTATTATTGTATTGGTGTTTCATCGTTttgatataaattatttaataaaatgatacACATTTTAA
>TCONS_00037601
AAACGGCAGCGCTGGGAACTAGACTACACAGGTTTGTATGAACTTACACAGATGATTTTGGAGCTTTCGTAATAACAAACATAACATAACTTACTGTACAGCGTTTCTGCGTCGTTTGATCTGTCGACTGTGTGTTGCCGTGTAAGCGAATCATGGACAGTGAAGTGCAGAGAGACGGACGAGTTCTTGATCTAACAGATGATGCCTGGAGAGAGGACAGACTGCCATACGAGGATGTGACGATCCCACTGAGTGAACTTCCTGAAGCTGAGCAGGACAATGGTGGGTCGACAGAGTCCGTCAAAGAGCAAGAGATGAAGTGGTCAGATCTCGCCCTGCAGAGTTTGCATGAAAACACCCCAAATGTCGGCACTTAGATCAGAAGCTTCTCTTATCCTCTCTGACTGATTCTTCACCGTGTGTTTGTCTGCAATTTGGGTCCCGGATCCAAGATTTATAAAATAACTGACTCATGTATTATTGTATTGGTGTTTCATCGTTttgatataaattatttaataaaatgatacACATTTTAA

Function

symbol description
anapc13 Predicted to be involved in protein K11-linked ubiquitination. Predicted to be part of anaphase-promoting complex. Orthologous to human ANAPC13 (anaphase promoting complex subunit 13).

GO:

id name namespace
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005680 anaphase-promoting complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-298 Predicted to be involved in protein K11-linked ubiquitination. Predicted to be part of anaphase-promoting complex. Orthologous to human ANAPC13 (anaphase promoting complex subunit 13).

Ensembl:

ensembl_id ENSDARG00000078435

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037599 False 498 mRNA 0.45 3 24536233 24537058
TCONS_00037600 False 432 mRNA 0.44 3 24536257 24537061
TCONS_00037601 True 539 mRNA 0.43 2 24536265 24537061

Neighbor

gene id symbol gene type direction distance location
XLOC_018924 NA coding upstream 34550 24456028 ~ 24501683 (+)
XLOC_018922 CR759955.2 coding upstream 97391 24423198 ~ 24438842 (+)
XLOC_018923 NA coding upstream 99248 24436266 ~ 24436985 (+)
XLOC_018920 cadm1a coding upstream 123806 23953181 ~ 24412427 (+)
XLOC_018921 BX890610.1 coding upstream 299961 24236151 ~ 24236272 (+)
XLOC_018926 CR759955.1 coding downstream 10463 24547524 ~ 24547600 (+)
XLOC_018927 BX510932.2 coding downstream 131160 24668221 ~ 24668337 (+)
XLOC_018928 BX510932.1 coding downstream 212601 24749662 ~ 24749779 (+)
XLOC_018929 NA coding downstream 328088 24865149 ~ 24868912 (+)
XLOC_018930 jam3b coding downstream 447909 24984970 ~ 25046991 (+)
XLOC_018919 BX005227.1 non-coding upstream 851397 23684720 ~ 23684836 (+)
XLOC_018945 BX510938.2 non-coding downstream 809024 25346085 ~ 25346388 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_04987990_04988532 ANC13, ANAPC13.2.L, ANAPC13, ANAPC13.1 misc CI01000006 null 4987819 ~ 4988879 (-)