XLOC_018930 (jam3b)


Basic Information

Item Value
gene id XLOC_018930
gene name jam3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 24984970 ~ 25046991 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037605
ttggGTCGGTGAGCGCGAGCCTCTCCATCCTCTCCTAAAGCCCTTTACTTTGCGCATGTACAGCCAAACAGAACATTTCACCGACTCCAAGATGGCGTTAACACCACTGGCTTGCGTTCTGCTTCTCCTTTCCATGCAATGTTACATCAGCACCTTGGCAGTCCTCCTGAAGTCGACGAATTCTAAACCGTGGGTCAACGAGTTTGAATCAATCGAGCTGTCCTGCATGATCGAGTCCATCACCACCACTAAACCCAGAATAGAGTGGAAGAAGATTAAGAATGGAGACCCAAGCTATGTGTATTTTGATAATCAAATATCAGGTGACTTGGAAAGGAGAGCAAAAATTCGAGAGCCTGCAACCCTGGTCATTCTCAATGCCACAAGATCGGACAGCGCTGACTACCGCTGTGAGGTCACAGCACCCAATGACCAGAAATCCTTCGATGAGATCTTGATATCACTCACTGTACGAGTGAAGCCAGTCGTGCCAAGATGCTCTGTGCCCAAGTCTATCCCGGTGGGCAAACCAGCAGAGCTGCATTGCCTGGAGGATGAAGGCTACCCAAAATCTCAATACCAGTGGTTCCGCAACAAGGAGGAAATCCCGCTAGATCCCAAGAGCAGCCCAAAGTTCTTCAACTCCACTTACACCCTAGATGGGGAAATGGGCACGCTGAAATTCAGTGCGGTCAGGAAGGAGGACGCGGGAGAATATTACTGCAGAGCCAAAAATGAGGCTGGCATCTCTGAATGTGGACCGCAGATGATGGAAGTTTATGACATCAACATTGCCGGCATCATCTTGGGAGtcgtggtggtggtgatggtccTCTTGTGTATAACAGTGGGCATCTTCTGTGCCTATAAACGTGGCTACTTCACCAGCCAGAAGCAGACGGGAAACAATTACAAACCTCCAGCAAAAGGAGATGGAGTGGACTATGTCAGAACAGAGGATGAGGGGGATTTCAGGCACAAATCCTCATTTGTCATCTGAGAGGAGGAAGATTTCTGATGGAAGAGATGCAGAATTACGTTCGATTTATTGGCGCTATTTTACCTCGCAGACACAAATCCCCAAATGAGGACACAGATGTCAGAGCTGCCACGGCACGTGCCTCGCTTTACGACACAACAGTGACTACAAAACTTGTATTTGCCAAAGGTGACAAATAATCGCATCTGATCACTGTTTAAAGACGTATTAGATGTTACTCTTTTCAACTTTTACAGCCCCTTTTTACGACTGACTAAAATCTCAAATTTGAGTAGAAGCCGATAAATACAGTAGTACATCCAGAAAACGTTTTCCTCAAGCTCTTCTGTCACTTTGAGAACATTTGTTTTGTACTAGCTAAATTTCTCAGACTATTTTTGatggaatatattttaaaaatgcctatagaaatcaaaatgttttacttttttaaatatttgtaaaatactaACCTGGAAGCCAGTACCTTTTAGttttagcttctttttttttgatTGTGACTAAGTTTAAACCACTCACTTCACATCCTCGGTTTTCGTTCTACAACATGCAAACGATGCACCAAACCACTCGACGTGTGGATGTTTTGTTTTCCAGTTCAAATCCTTTCAGTCGCATATCCAGCGAACACCGGCTTCAATCAAAGGTCTTATGTAATGACAAAACTGCTGGGATTTCATGGTAGTAGTGAAAGGACGTTCCATGTTCATGTTTGTAGATAGTCTTAGACGGTGAACATCTTCAgaaaaacaccagcaaaaaaaaacaaacaaacaaaaaaaaaagctggagATTATTTTGAAAGACCAGTGctgtgtatttttgattttaagtGTCCTTCTTATGCTAGCTGTTTATCTTGTATATAGTGAATATACTGTCTAGgttgtttcttatttttttattatgatatatttttcctttgctttctcttttctttttattatttgagtGAATAAGCACACTCCTCATGTTACTTTATAACACAACAGGGTTTGTTAGTTGGCTAACTGTTACTGGTTGTATATAGATCCACTGTGCGATACACTGTGCGTAAGACGTTATTGGTCGAACCAAACGCTGAATGAGGCAAATATGACACTCTTTCCATGGTAGAGAGGGGATCTGCCTTATTTAATACATTACAGCAAACCTGGAACCATGTAAACTTACCTTTACTTCTATAGCCATGATTATGAATATATTTAGACTGTTCTCATGTAACGTTGACCTACATGAAGAGTTTAAGGAGTACAATCAGCTGAAGCGGAATGCTACATTTTATGAGTAAAACCATTTGTTTGAATCCTTACATGCTCAGAAAACTTCTGAAGAATCATTCCTCTTAAGTGCCTTCCTCTGTAGCCTGAATTGTGACAATAATGCAGACAGAGCCGTAACCATTCTAGATACTGAGGGGACATGTCTATGTATATAAACAACCAATAATTGTTTTGTGCAACataagattttcattttttctctcttttatttactgttggtggctgtttttgctccattgacttccaataTAACCACATTATTTGATTGAAAAACCATGACACCATTTAATCAGGCGTTTttaattgttggtggttttccctgttgggaagaggtcaaattagCAGTTTTTACAGTTGATCATCAGTCAACACTTTAGATTGATCTGGTCAAAAAAAAATTTGGATTTaggattttatatggagttataTGGAGTATGACagcaaacataacaaaagggtagtacatataaacagtgcacaagggttttTTGCTTCAGCATTCTAACAGTGTTGGTCAATATCAGAATGATTGTGTTGACCAATCAAATCAAAGTAGGCGGAGTTTACCATTCACAGAAGAAGAGTGTTAAAAAGCATTGGTGTTTGACAACTTTGTgttgtacaataaataaataaaaaaaatcaactgcCTATAATGccaagtaatgcattacattaagATTGAGATGTGCTGAATTGGAAATATAGTATATTTattgtgggaaaaaaatattaaatgctttttatatttaaaaaaaaaattatgtactttttaaatattttaacaataatgaaacaaattgtttattttaacattaaaagacAGCAAGATCACCTGCTTAGAATGTTTTCACTCAATTGAATGATTGTTATCAGTGAtcatcagctgatagatatgggccagtaggtgttttctgcgcctactagtagaCTCAGAAGGCTGCTATCATCCAgacacatggttaatcagctatactaacagATAAGACCCAAGATCCAGatgtgtttttacattactgtgacggttgggtttagggttggggtagctgttaataaaatacatttaagtgaaaattaataaatattatatataattctcgttaacttcttgTGGCAACCGAATGTGATCTATAGCTAATTAACTATGTGGATGATTGAAAACAagcttctgagcctactagtaggcacaGAATGCCCCTACTGGcgcatatctatcagctgataacgccaattcaatcgagtgataacactCGATAATCGGCTGGCAAGATAAGGTTGAAGCAGTAAAATATTACTAACTGACCACCATTttatgataataacaaataaaacaactgCCAATAATTTCCAGGTATTCATACTACTTCAAAATTTAGACATGTTGTattcaaaatatgatttattcaatgtgaaaaaaatataaaaggtttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacgtttttatatactttttaatatttgaatatgacacaactgattaattttaacatttaaagagCGTGCAAGATAAGATTGAAGCAGTGACATATTACTATTTGACAACTGTTTTACAACAACAGAGGTTAAAAGTTAAACAAATACCAATAATGGCCAGTTATGCATACTCCTACAAAATGTAGTTGTGCTGAATTGGAAATATGGTATCATTTAATGTGGGAAAAGgacatttttatatacattataacAAACTGTTCCCCCCTGTGTTTATCATGTGATTACAGCCTGTTAGCAATTACTGCTGTAGCAATTCATTGGAATATGCAGAACAACTTTTAATCAATCACTTTTAATTCATCTCTCTTAGACCAGGTCAATAGTAAGTAATGAACAGGTGTTTGAGAGGAATGATAATGTTCTGCGCCCACCGTTTTGGACAGATCTCtagtattataaatatttttttgtaaatagacCTGTTGTTGTGCATTGATTTGATgacttctttttcttttcattgacGTAGATATTCTATTATGTATTAGTGCCTAAATGTAGAGTGAAGTAATGTTTGAGGAGGACAGAGCACTAGTGTTAAATCAGCAGATGGAATCGAGTTTTCACTAGACaaatatataattcattttataTAGTAAGTTAGAAAGCGAGGTACGTTATGATATCTAGATATATAGTTCTTCATATATATCTACATATATTGAGTACTGTGAGCATAACGGAAAATCAAGTATTTTGTgggtttgaaaataaaaatcaggaGAGCTGTACCAAATACTGACTGCCAAAAAGAGCATTTTCTCCAATTCCCGTATTATTCTGCTCCCAGTTCTCTGTCTTATTTTTCTGGGTTCGTAACTCTTGAGTAAGATGTTTTGGAGGCCGAGTTCAGATGTTTTCCACTCATTTTAGTTTCTGTGGTTGTTTTGGAGACAGCTGGAATTTGAAATGAAGCATATTTCATTCACTGAATTCATGTTAATGTCCCGTTGGGTTTGGGACCGGTACAAATCCTGTGTGAATTCTTGAACAGTATGTTTGTGATTAATAAAAACTCACTTCTTAAA

Function

symbol description
jam3b Predicted to enable protein heterodimerization activity and protein homodimerization activity. Acts upstream of or within myoblast fusion. Predicted to be located in bicellular tight junction; desmosome; and plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; musculature system; myoblast; nervous system; and posterior lateral plate mesoderm. Orthologous to human JAM3 (junctional adhesion molecule 3).

GO:

id name namespace
GO:0007520 myoblast fusion biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0030057 desmosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-441 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Acts upstream of or within myoblast fusion. Predicted to be located in bicellular tight junction; desmosome; and plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; musculature system; myoblast; nervous system; and posterior lateral plate mesoderm. Orthologous to human JAM3 (junctional adhesion molecule 3).

Ensembl:

ensembl_id ENSDARG00000061794

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037605 True 4865 mRNA 0.37 9 24984970 25046991

Neighbor

gene id symbol gene type direction distance location
XLOC_018929 NA coding upstream 116058 24865149 ~ 24868912 (+)
XLOC_018928 BX510932.1 coding upstream 235191 24749662 ~ 24749779 (+)
XLOC_018927 BX510932.2 coding upstream 316633 24668221 ~ 24668337 (+)
XLOC_018926 CR759955.1 coding upstream 437370 24547524 ~ 24547600 (+)
XLOC_018925 anapc13 coding upstream 447909 24536233 ~ 24537061 (+)
XLOC_018931 zgc:171740 coding downstream 7429 25054420 ~ 25062590 (+)
XLOC_018932 dixdc1b coding downstream 21224 25068215 ~ 25119942 (+)
XLOC_018933 ddx10 coding downstream 73555 25120546 ~ 25171784 (+)
XLOC_018934 si:dkey-183i3.9 coding downstream 134012 25181003 ~ 25183430 (+)
XLOC_018935 si:dkey-183i3.5 coding downstream 140219 25187210 ~ 25197103 (+)
XLOC_018924 NA non-coding upstream 483287 24456028 ~ 24501683 (+)
XLOC_018945 BX510938.2 non-coding downstream 299094 25346085 ~ 25346388 (+)
XLOC_018946 BX510938.5 non-coding downstream 299790 25346781 ~ 25347003 (+)
XLOC_018949 BX510938.4 non-coding downstream 318888 25365879 ~ 25366134 (+)
XLOC_018951 BX510938.3 non-coding downstream 329964 25376955 ~ 25377279 (+)
XLOC_018952 NA non-coding downstream 387698 25434689 ~ 25436244 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_04645532_04679353 JAM3 coding CI01000006 null 4645488 ~ 4679554 (-)
eurasian perch (Perca fluviatilis) G170417 NA non-coding NC_053127.1 CM020924.1 32099253 ~ 32103217 (+)