XLOC_018931 (zgc:171740)


Basic Information

Item Value
gene id XLOC_018931
gene name zgc:171740
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25054420 ~ 25062590 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037606
ATGGATATTATAGGACTCGGCAACGGCTATTTGAGGATGGGTTGTGCAGAGCTTCTGTTATAGCTATTTGCTCTGTGTGGAAATCACCGCCACCGTGGAAGAAAACGGCAGCTCATGGCACCAGGCCTACACGAACTCGGGCTCCAGCCCCCTTCCAGCACCACCTGAACACTTGTGCAAGGCCTGCGGAGGCCAGTTTGACACTGTAAGAACGCATGTCTGCGTGGACTGCAAGAACAGCTTCTGCGGCCGCTGCTCGGTGCAGGCTGATCTCCATCCGCGGATGTGCTTCACCTGTCAGCGGCTTCACTGCACCTTCTTTGAGCGGGCAGACTTGATGAGGCTGAAGGTGAAGGACCTGCGGGACTATCTCCATCTGCACCAAACCCCCACGCAGATGTGCAGAGAGAAGGAGGAGCTGGTGGAGCTGGTGCTGGATCAACAGGCTCCAAGAGGCAGCAGCGGTGGTGGCGCACAGTCCCGCTCACAGCCGTCACAGCCTCCTCTAGCTGAATCTGAAGCCCTCACAGAGGAAGAGGATGAAGACgaggaggaggaagatgaagaggaagaagaggaagaggaagaagaagaagaagaggtagAAGGAGGGGATGGAGCTGTAGATGGAGAAGGAGAAGAAGAGGGTGAGGaagaggatgaagatgatgaggaaGAGTCGACAGACAGTGAGGAGACGCTGGTGCACAGCAGAAGAGCCTCTCTGTCAGATCTGAGCAGCGTGGAGGACATCGAAGGCCTCAGTGTGCGGCAGCTAAAGGAGATCCTGGCACGCAACTTTGTGAACTATCAAGGCTGCTGTGAGAAATGGGAACTAATGGAGAAGGTCACCCACCTCTTTAATGATCAGAAAGACCTTCACAACTTGGtttcaaatacaaatacagaaGCAGCTGATCCTGCGGAGCCCAGCGGACAGGAGGAGAACCTGTGTAAGATCTGCATGGACTCTCCAATTGACTGCGTGTTGCTGGAGTGTGGACACATGGTCACATGCAGCAAGTGTGGAAAACGAATGAACGAGTGTCCCATCTGCCGCCAGTATGTGGTTCGAGCCGTGCACGTCTTCAGATCGTGAAATTTGGGTGCAAAGACACAGATCGGCCCCCTGCAGGTTGTTTTCTGATAATGTTCCATTTTGCCTCTTTGTTTATCAgtttacattattaaatgcactttttgtttttttattgttgcaatGGTGCGGCTTAGAAGTTATTTGCACTTTTATTTaggctttgttttttttatttccataatacaacatttttatttcacgGTTTCTATTTCATTTCATGGtttggtcatatatatatatgagcaaacaATGTTTAAAGTTGTATTGAAGACACATGTTCATTGgaagtttacacaaaaatgaaacCTTCCTGATTATTTAC
>TCONS_00037607
ATGTGCTTCACCTGTCAGCGGCTTCACTGCACCTTCTTTGAGCGGGCAGACTTGATGAGGCTGAAGGTGAAGGACCTGCGGGACTATCTCCATCTGCACCAAACCCCCACGCAGATGTGCAGAGAGAAGGAGGAGCTGGTGGAGCTGGTGCTGGATCAACAGGCTCCAAGAGGCAGCAGCGGTGGTGGCGCACAGTCCCGCTCACAGCCGTCACAGCCTCCTCTAGCTGAATCTGAAGCCCTCACAGAGGAAGAGGATGAAGACgaggaggaggaagatgaagaggaagaagaggaagaggaagaagaagaagaagaggtagAAGGAGGGGATGGAGCTGTAGATGGAGAAGGAGAAGAAGAGGGTGAGGaagaggatgaagatgatgaggaaGAGTCGACAGACAGTGAGGAGACGCTGGTGCACAGCAGAAGAGCCTCTCTGTCAGATCTGAGCAGCGTGGAGGACATCGAAGGCCTCAGTGTGCGGCAGCTAAAGGAGATCCTGGCACGCAACTTTGTGAACTATCAAGGCTGCTGTGAGAAATGGGAACTAATGGAGAAGGTCACCCACCTCTTTAATGATCAGAAAGACCTTCACAACTTGGtttcaaatacaaatacagaaGCAGCTGATCCTGCGGAGCCCAGCGGACAGGAGGAGAACCTGTGTAAGATCTGCATGGACTCTCCAATTGACTGCGTGTTGCTGGAGTGTGGACACATGGTCACATGCAGCAAGTGTGGAAAACGAATGAACGAGTGTCCCATCTGCCGCCAGTATGTGGTTCGAGCCGTGCACGTCTTCAGATCGTGA

Function

symbol description
zgc:171740 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in cellular protein metabolic process and negative regulation of apoptotic process. Predicted to be active in cytoplasm and plasma membrane.

GO:

id name namespace
GO:1902042 negative regulation of extrinsic apoptotic signaling pathway via death domain receptors biological_process
GO:2001271 negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-29 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in cellular protein metabolic process and negative regulation of apoptotic process. Predicted to be active in cytoplasm and plasma membrane.

Ensembl:

ensembl_id ENSDARG00000056244

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037606 False 1421 mRNA 0.49 6 25054420 25062590
TCONS_00037607 True 816 mRNA 0.53 4 25057176 25062268

Neighbor

gene id symbol gene type direction distance location
XLOC_018930 jam3b coding upstream 7429 24984970 ~ 25046991 (+)
XLOC_018929 NA coding upstream 185508 24865149 ~ 24868912 (+)
XLOC_018928 BX510932.1 coding upstream 304641 24749662 ~ 24749779 (+)
XLOC_018927 BX510932.2 coding upstream 386083 24668221 ~ 24668337 (+)
XLOC_018926 CR759955.1 coding upstream 506820 24547524 ~ 24547600 (+)
XLOC_018932 dixdc1b coding downstream 5625 25068215 ~ 25119942 (+)
XLOC_018933 ddx10 coding downstream 57956 25120546 ~ 25171784 (+)
XLOC_018934 si:dkey-183i3.9 coding downstream 118413 25181003 ~ 25183430 (+)
XLOC_018935 si:dkey-183i3.5 coding downstream 124620 25187210 ~ 25197103 (+)
XLOC_018936 si:dkey-183i3.6 coding downstream 136047 25198637 ~ 25206227 (+)
XLOC_018924 NA non-coding upstream 552737 24456028 ~ 24501683 (+)
XLOC_018945 BX510938.2 non-coding downstream 283495 25346085 ~ 25346388 (+)
XLOC_018946 BX510938.5 non-coding downstream 284191 25346781 ~ 25347003 (+)
XLOC_018949 BX510938.4 non-coding downstream 303289 25365879 ~ 25366134 (+)
XLOC_018951 BX510938.3 non-coding downstream 314365 25376955 ~ 25377279 (+)
XLOC_018952 NA non-coding downstream 372099 25434689 ~ 25436244 (+)

Expression


Co-expression Network