XLOC_018934 (si:dkey-183i3.9)


Basic Information

Item Value
gene id XLOC_018934
gene name si:dkey-183i3.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25181003 ~ 25183430 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037615
CGCACAGAGACGTTTGGAGCAGCGCGCGCGCCCCAGTCTGACAAAAACGCTTTGTGAGGTAAGGCACTCTTACTTCACGACAAATTGCATCATTAAAAGTTAAGTTCCACATCTTTTTCTCACTAAATTTGGTTTATGGTATTAATAGACACTTTGAATCATGCTTGACAAAGACAACGACACATGTTCTACTACAGACGCAGCGATGTTCCAAAAACGTCTTGGGGACGTGCGTATAACGTCATAACAACATTGAGAAAACAACTAATTTATTATTCTACGTAAAAAATAGGCTAACATCTGTCgttttaaacattcaataaaCCATTAACGAGTTAAAATTGGGGTTTTATCGTAGCTACGAAGCAGACTTGGAGAATACGTAATGAATAGAGGCTACGTCAGCGATCTGTGGGAAGTCATCTTTCCAAACCAACACCTTTTCCCACACCAATTCAGCGAACTGGACCGGGCTGTTATGCAGCGCCTTCAGAGATGCTCTCCGTGATTGTTGGAAATTAAACCAGCGAGTAACGGATATTCAGCCGCAGTTCTCGTGGAATAATTTGTGAACGATGAAGGTTTCTGAGATCTCATGGGGCGCTTTTAACGGGGCGTCCGAGACTAACGGGACGCGCGCGGAGAAAGTTCAGCACGTGCTCCAGCCTTTCTCATCCACCGTCGCTCTCCTGGTGCTCGGGATGCTCATTATCGGGATTATATTACTGTCACTGACCACCTACCACTTTCACAAAAGCAAGATGAAGAAGAGGAAGATGTTGAGGGCACAGCAGGAATATGAGCGGGATAACGGTGGATCCTCTGTCCCAATAAAGCCGAATCCCGCATCCAACCGCTGCGTGATCGCGCGCCCCGCTCCGCCGCAACATCCACCGGCCAACACTGCTGATGAGAAACACCGCGAGGGAGTCCAGCTTGATGGCTCTTCATAACGGACGAATGAAGACTGGTTTTGTAAATAAGTAAGATGAACAGGCGCATGTTCACGTGCGTTCAAATGGGACTACGATCATCTTATAATGGACTTTAGAAAGTCTCTGAATAATGCGTGTCCTTTAATGTAATAATAGCTGAGCCTAATGCGTTGTAAGTGGAAATCAATGGATGCTGAACACACAACAGTGGGCCGGTGCTTAAAGGGAAACTTGGTCTCTAGATGCTGTCCAAGGTGCTGATTGTTTTATACCAATTTAACCCATTTAATCCCATACTTTATATGTACTTTTGAGTTTAAAACGAGTAGCTGCACATAACTGAActataaatgaaagaaaatggcGACTGCATTGGGAATATTTTACTTTGTCAAGCTGCCACATACACAACTACTGGTTTAATCAATTCCAATATGAAAGATAAGCAGGTTCTAcgccataataaaatatttaaaaggtctattattaatgtatattaaTGTTGCTTTGTTGTAGATTAAAGCTAACCTATTATATTTGTGTCCAATGGGATAAACAGAGTGGCATTTTAATTAATGAACTGATTTGAATCATGCCATAAAGGTGTAAATGTCAAGGTGTTTCttcattattaaacattaaacaaggattattcattattttcttttccCCAGACTGCCTgataataaaaaacttttttaatattaacatcatATCATCAATCATCACctcataaatgtgtaaatatcaaGGTAATACAGCTAGAgtaataatcattcattcttaCATTTTCCCTTTCATCAGAACTGCCTGATAATTGATGAAAATTATCCTATTATCATAAATCATCacataaataaagtgtaaatgtCAAGGGATATTTCCAGTATTGTAACCGCGttaagcaatatttattcatgttttctaCACCAATAAGAAATGTTAATAATATGCAATATATAAAGATCATAATAtaatgtgtgtgttattttttaatattaagatattaatatttttatatatgtatatttcaaatgtttcccatCGACCACAGttgtaatttgatttatttatttgagtagaGTACAAAATGTGGGATTAAATGGGTTATCTTTGTCTAATAGTAATGGGGATGACTACAACAGTGCTATTCTGCTGTTATAAATAGACTGTATTAACTGAAGATAAAACTGTATTAAAGCTTAGAAAATTTACAATCAACTTTGTTTATCATATTCACCTGATTTTACCATACGCAGAGCCCTGTGTTCACCATATTAAagcacattaattaaataaaataagatgtttctttcttatttatacttttaattcattattgttattaaaacagaaataaagctTATTTGAC
>TCONS_00039413
TTGGAGCAGCGCGCGCGCCCCAGTCTGACAAAAACGCTTTGTGAGGTAAGGCACTCTTACTTCACGACAAATTGCATCATTAAAAGTTAAGTTCCACATCTTTTTCTCACTAAATTTGGTTTATGGTATTAATAGACACTTTGAATCATGCTTGACAAAGACAACGACACATGTTCTACTACAGACGCAGCGATGTTCCAAAAACGTCTTGGGGACGTGCGTATAACGTCATAACAACATTGAGAAAACAACTAATTTATTATTCTACGTAAAAAATAGGCTAACATCTGTCgttttaaacattcaataaaCCATTAACGAGTTAAAATTGGGGTTTTATCGTAGCTACGAAGCAGACTTGGAGAATACGTAATGAATAGAGGCTACGTCAGCGATCTGTGGGAAGTCATCTTTCCAAACCAACACCTTTTCCCACACCAATTCAGCGAACTGGACCGGGCTGTTATGCAGGTAggaataaacaattaattattgtCCTAAAAGCGTTATTGTTTAGAGTGTCATTAAATAAGACCAGGGGCAATTATTtgcgtttttaatttttaaacatccCAATTTGTTCTCCTTTCAGCGCCTTCAGAGATGCTCTCCGTGATTGTTGGAAATTAAACCAGCGAGTAACGGATATTCAGCCGCAGTTCTCGTGGAATAATTTGTGAACGATG

Function

symbol description
si:dkey-183i3.9 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-302 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000104326

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037615 False 2307 mRNA 0.37 2 25181003 25183430
TCONS_00039413 True 686 lncRNA 0.39 1 25181016 25181701

Neighbor

gene id symbol gene type direction distance location
XLOC_018933 ddx10 coding upstream 9219 25120546 ~ 25171784 (+)
XLOC_018932 dixdc1b coding upstream 61061 25068215 ~ 25119942 (+)
XLOC_018931 zgc:171740 coding upstream 118413 25054420 ~ 25062590 (+)
XLOC_018930 jam3b coding upstream 134012 24984970 ~ 25046991 (+)
XLOC_018929 NA coding upstream 312091 24865149 ~ 24868912 (+)
XLOC_018935 si:dkey-183i3.5 coding downstream 3780 25187210 ~ 25197103 (+)
XLOC_018936 si:dkey-183i3.6 coding downstream 15207 25198637 ~ 25206227 (+)
XLOC_018937 sycn.3 coding downstream 32967 25216397 ~ 25219305 (+)
XLOC_018938 sycn.1 coding downstream 38510 25221940 ~ 25222528 (+)
XLOC_018939 sycn.2 coding downstream 43128 25226558 ~ 25227191 (+)
XLOC_018928 BX510932.1 non-coding upstream 431224 24749662 ~ 24749779 (+)
XLOC_018927 BX510932.2 non-coding upstream 512666 24668221 ~ 24668337 (+)
XLOC_018926 CR759955.1 non-coding upstream 633403 24547524 ~ 24547600 (+)
XLOC_018924 NA non-coding upstream 679320 24456028 ~ 24501683 (+)
XLOC_018945 BX510938.2 non-coding downstream 162655 25346085 ~ 25346388 (+)
XLOC_018946 BX510938.5 non-coding downstream 163351 25346781 ~ 25347003 (+)
XLOC_018949 BX510938.4 non-coding downstream 182449 25365879 ~ 25366134 (+)
XLOC_018951 BX510938.3 non-coding downstream 193525 25376955 ~ 25377279 (+)
XLOC_018952 NA non-coding downstream 251259 25434689 ~ 25436244 (+)

Expression


Co-expression Network