XLOC_018938 (sycn.1)


Basic Information

Item Value
gene id XLOC_018938
gene name sycn.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25221940 ~ 25222528 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037620
ACTCACcaaactgaaaacatgaggggtcTGATTGCTCTTCTCCTGGTGGCTCTGTGCCTCGAAGGTCTCAACGCAGCATGTCCTGATCAAGCCACACTGAAAGACGACTATGACAGCAAACTCTGTGCCCAGATGTTTGAGCACAGCAGCTACTACTATGACGAGAGCTGCACTGGCAGTTTTCTGAATGTGTATCCTAATGAAGACACCCCCATCATCCCAAAGGTGTGGGACGACCGCATTTCCTCTCTGGTAGTGAGACGCGGCTGCTCGCTGACGGTGTGGTCCAAATCCAAGAAGGAGGGAGACAAGAAGAAGTTTTCTGCTGGGGCCGCCTACCACCTGAAGGAGTATAAGAGAGGCCTGTTTGGAACCTGGAATGATGCCATCTCTGGATACTACTGCACATGCTAGACCTGAAGACAGAGACTCAAAAGATATAAATCTATAACACCAGTGATACAAGAGAACAGCTGTAACCttgtgttttcaaatacaattatAAATTCAGCTCActgtatttctgtttaatgacTGCAAATGAATTAAACATCACATGTTTGCAAGAACATGATGCAGAAATATTTAA

Function

symbol description
sycn.1 Predicted to act upstream of or within exocytosis. Predicted to be located in secretory granule membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000090469

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037620 True 589 mRNA 0.45 1 25221940 25222528

Neighbor

gene id symbol gene type direction distance location
XLOC_018937 sycn.3 coding upstream 2635 25216397 ~ 25219305 (+)
XLOC_018936 si:dkey-183i3.6 coding upstream 15713 25198637 ~ 25206227 (+)
XLOC_018935 si:dkey-183i3.5 coding upstream 24837 25187210 ~ 25197103 (+)
XLOC_018934 si:dkey-183i3.9 coding upstream 38510 25181003 ~ 25183430 (+)
XLOC_018933 ddx10 coding upstream 50156 25120546 ~ 25171784 (+)
XLOC_018939 sycn.2 coding downstream 4030 25226558 ~ 25227191 (+)
XLOC_018940 gng8 coding downstream 8632 25231160 ~ 25235926 (+)
XLOC_018941 tmem45b coding downstream 13769 25236297 ~ 25247052 (+)
XLOC_018942 or132-1 coding downstream 100803 25323331 ~ 25325845 (+)
XLOC_018943 or132-2 coding downstream 113279 25335807 ~ 25338687 (+)
XLOC_018929 NA non-coding upstream 353028 24865149 ~ 24868912 (+)
XLOC_018928 BX510932.1 non-coding upstream 472161 24749662 ~ 24749779 (+)
XLOC_018927 BX510932.2 non-coding upstream 553603 24668221 ~ 24668337 (+)
XLOC_018926 CR759955.1 non-coding upstream 674340 24547524 ~ 24547600 (+)
XLOC_018924 NA non-coding upstream 720257 24456028 ~ 24501683 (+)
XLOC_018945 BX510938.2 non-coding downstream 123557 25346085 ~ 25346388 (+)
XLOC_018946 BX510938.5 non-coding downstream 124253 25346781 ~ 25347003 (+)
XLOC_018949 BX510938.4 non-coding downstream 143351 25365879 ~ 25366134 (+)
XLOC_018951 BX510938.3 non-coding downstream 154427 25376955 ~ 25377279 (+)
XLOC_018952 NA non-coding downstream 212161 25434689 ~ 25436244 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G119447 sycn non-coding NC_035910.1 CM008313.1 5395942 ~ 5443031 (-)