XLOC_018941 (tmem45b)


Basic Information

Item Value
gene id XLOC_018941
gene name tmem45b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25236297 ~ 25247052 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037624
agacaGGTAACTAGGATATTCCCATCACAAGAGCCGCACAGGAGAACTCTTGCACTGGGAGCCCCGCCGTGACAACACAACACACAGGCCAGCATTCAGGAGCAGGATGGCCAACTTCAAGGGACATGCATTACCTGGTACATTCTTCCTGCTGTTTGGCCTGTGGTGGTCGATAAAATGCCCTTTCCGACAAATACTGAGGAGAAAAGAGAGACAAGttggagacagagagagacaaaagCTCACCGCACTCTTTAACCGCATTGACTTAATCGAAGGATCGCTCAAGATCTTCTTTGCATTTGTTGGTGAGCCATAACCATGGGACTCATTCATGTTTACTTTCATATTAAAATATgagtgtaacccac
>TCONS_00037625
agacaGGTAACTAGGATATTCCCATCACAAGAGCCGCACAGGAGAACTCTTGCACTGGGAGCCCCGCCGTGACAACACAACACACAGGCCAGCATTCAGGAGCAGGATGGCCAACTTCAAGGGACATGCATTACCTGGTACATTCTTCCTGCTGTTTGGCCTGTGGTGGTCGATAAAATGCCCTTTCCGACAAATACTGAGGAGAAAAGAGAGACAAGttggagacagagagagacaaaagCTCACCGCACTCTTTAACCGCATTGACTTAATCGAAGGATCGCTCAAGATCTTCTTTGCATTTGTTGGCATTATGGCTGAGCAGTTTGTTCCCGATGGCCCTCATGCACACTTGTATCAGGACGGTTGGGTGAAGCTGATGAACTGGCAGCACAGCACCATGTACTTGTTCTATGGCATCTCTGGCATTGCAGATGTTCTCAGTGTATCTTCACACCACGTGCCGGTTGGTCTTGACCGTCTCTTCCTTTCCTTGGCTCTCTTTGTTGaagGCTTCCTTTTCTACTTCCACATCCACAATCGTGAACCTCTGGACCAGCACATTCACTCACTGCTTCTGTTTGCTGTATTTGGTGGATCTGCCAGCACAATGATGGAGGTGTTTAAGCGAGAAAACGCAGTGCTGGAGCTTTTGAGATGCACTCTGGCCATCCTACAAGGCACATGGTTCTACCAGATCGGGTTTGTGCTGTATCCTCTGAGTGGACCAGAGTGGGATCTGACAAGGCATGACAACATCATGTTTATCACTATGTGCTTCTGCTGGCATCTGGCTGTGGCGCTGCTGATTGTGGGCATCTGCTACTGTGGAGTGTTTTGGACTTCAAAATGGTGTCAAAGAAGGCAGAGGGGTGACATGGAGATGGGTCTCAGAAAGAGCACTTCCACCGACTCCAGCTCCCAAAAGGCTTTGCTTCAGGAATCAGATGAAGAGTAGTGGAAACCTTTCATGGCTGCCAAAAATGAAGGCACTGAATGCAGATCTTTTAGCTCGTTACTCTGCTAACACACTCCTACAGGACTTTATGAGTTTATGTTTGCGATCATTTCACTGCAAAAGATTCAGAAGATTTTCATGTGCTTGTGCTAAAAGGATTACACTGAAATGGACTTGTAAATAATGTGGTAGTGACAAATGTCAAACGATTTCCAATCTTGAAATTATATTGTGGTTTCATGATAGTCTTTTAAATATAGTAATAGTCTCAAACAAGAATGAGATTCACTCCAAAACAGCTATGATAGATGTATGAGATATTCAACAGTGAAATTAAAGTAAGGAATATGTATATATCTACATTTATATGAATGTATAATTGTTTGTTGTTAGAACTGAACAAGCAGTTTGATTAATGTTACTTGCCACAACATGCAAATCACGTGGCTCAAAGCAGgcaaattatttgttttacatttacagcattCAAGTACAGGATTAAGCCCTGTATTCCAGTGTGCCATGTCATTTGGTTGACTTCACGTAACAGTTGTCATTTGATTATCACGATCATTTATTTATCACAATGCAATATTACTACCGAACACAGTACttgttaaattacatttttttagaagATAAGATATAGAAAGCACAAATAAACATCAAACAAAACCTG

Function

symbol description
tmem45b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM45B (transmembrane protein 45B).

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0008150 biological_process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0005588 collagen type V trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0003674 molecular_function molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1904 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM45B (transmembrane protein 45B).

Ensembl:

ensembl_id ENSDARG00000056239

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037624 False 371 lncRNA 0.47 2 25236297 25239753
TCONS_00037625 True 1637 mRNA 0.42 6 25236297 25247052

Neighbor

gene id symbol gene type direction distance location
XLOC_018940 gng8 coding upstream 371 25231160 ~ 25235926 (+)
XLOC_018939 sycn.2 coding upstream 9106 25226558 ~ 25227191 (+)
XLOC_018938 sycn.1 coding upstream 13769 25221940 ~ 25222528 (+)
XLOC_018937 sycn.3 coding upstream 16992 25216397 ~ 25219305 (+)
XLOC_018936 si:dkey-183i3.6 coding upstream 30070 25198637 ~ 25206227 (+)
XLOC_018942 or132-1 coding downstream 76279 25323331 ~ 25325845 (+)
XLOC_018943 or132-2 coding downstream 88755 25335807 ~ 25338687 (+)
XLOC_018944 or132-2 coding downstream 97322 25344374 ~ 25345902 (+)
XLOC_018945 BX510938.2 coding downstream 99033 25346085 ~ 25346388 (+)
XLOC_018946 BX510938.5 coding downstream 99729 25346781 ~ 25347003 (+)
XLOC_018929 NA non-coding upstream 367385 24865149 ~ 24868912 (+)
XLOC_018928 BX510932.1 non-coding upstream 486518 24749662 ~ 24749779 (+)
XLOC_018927 BX510932.2 non-coding upstream 567960 24668221 ~ 24668337 (+)
XLOC_018926 CR759955.1 non-coding upstream 688697 24547524 ~ 24547600 (+)
XLOC_018924 NA non-coding upstream 734614 24456028 ~ 24501683 (+)
XLOC_018949 BX510938.4 non-coding downstream 118827 25365879 ~ 25366134 (+)
XLOC_018951 BX510938.3 non-coding downstream 129903 25376955 ~ 25377279 (+)
XLOC_018952 NA non-coding downstream 187637 25434689 ~ 25436244 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_04524286_04525219 TMEM45B coding CI01000006 null 4523979 ~ 4526098 (-)
bowfin (Amia calva) AMCG00004589 NA coding CM030121.1 CM030121.1 54331248 ~ 54342566 (-)