XLOC_018935 (si:dkey-183i3.5)


Basic Information

Item Value
gene id XLOC_018935
gene name si:dkey-183i3.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25187210 ~ 25197103 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037616
ACAGTGCATCCTGACCGAGCACCGGGACTCCTGGACTCCAGCTCTGAGTGCAAAATGACAGAGTCAAGCTTGCGGATCAGTGGGGGCGCCGTCAGATTTGGAGCCACCTATGGAGGCAACCGTCTGTTCTCTGGAGCCCGGAGTGGTGGAGGCGCCAGCTCGGCTCTGTCCCGTTCACTCGGCCTGGCAAGGGGAGGAggtttgggtttaggttttggtgCTGGAGCCGGGGCCGTGGCCGGTGCAGGTGCTGGATTGGGCCTTGGCGGAGGTTCTCTGGCTCTCGGTGGTGGTCTTGGGTTAGGTGGTGGTCTTGGGTTGGGTGCCGGTGGTGCCAGAGCAGCAGGCGTCAGGGCTGGTGTGGCTCACCTGAGATCTCATCTGGGTGGCAGAGTGTTTAAAATCGGAGGCTACGGTTTTAACCCATCCTTCATCAGCTCTACCACCACAGTGGATGCAGGTGTCAGTCCGATGCCCAGCATTGACCCCTCGCTTCCATCACCAGACACAGTTCAGGTCACACGCATGAAGGAGAAGGAGGAACTGCAGGCCCTCAATGATAAATTTGCCTCATTTATTGATAAGGCACGGTCTCTGGAGCAGCACAATGCAGTACTCAGAGCCAAGATTTCTATGTTTACTAACCCGGAGCAGGGCGGACCTGCCAACACCTCCGTTCTTCTGACTTCTGCCATCGGGGCGTACAAATCTCAGATTGACAGCCTCTCTTCTACTAAAGAGGCCATAATTGCTGAGATTGAACACTTTAAAGCCATTATTGAGGACGATCAGGCCAGGTATGAAGAGGAAACCTCTCAAACCAAATCTCTGGAGCTTGACTGGACGGCGTTGAAAGAGGAAGTGGATAATCTGTACCTTACCCTCTTTGAGCTGCAGACCAGCATCTGTGGTTTGGAGGATCAAATTGCTCTGTCCAAGCAGGTGTATGATGCTAAAGTGAAAGAGGTGAGGACTATCGTGACTGGTGGAGTGAAGTCTGCCGTGTCGATCTCGGTGGATAATGCAGCCCAGGCACAGGACCTGACCTCAGCGCTGACCGAAGTCAAAGCTCACTATGAAACCCTGGCTCAACGCAGCAAGCAAGAAGCTCTGGTCTCAGTGCAGGACAGTCTCTCCATGATGTCTGTATCCTCGCAGCCTAGTTCTCAAACACTCACCTCAGCCAAAGACGAGCTCAGGGCTTACAAACTACAGATCGACTCTGTGCAGAGGGAGATCGAGAGGCTCAAGTCTCTGAACTTGCAGCTGGAGTCTCAGGTGGAGGAGGCCGAGTGTCACTCCAACTCTCATACAGAGACGTATCAGGATCAGGTTCTGACTCTCAAGTCTCAGCTTGATGATCTGAGGAAGCAAATCACTCAATACGGTCAGGAATATCAGGAGCTTCTGGCCAGCAAGATGTCTCTGGATGTGGAAATCACCGCCTATAAGAAGCTCCTGGACAGCGAGGAGAACAGGCTGAAGTCTGGAGGAGGAGTCACTGTGCACATGTCCAAGACTCTGCTTGGTGGAGGAGCAGGAGGAGCTGGAGGTCTGGGTGCAGGTGCAGGAGGCGCAGGTCTGGGTGGAGGTGCTGGTCTGGGTCTTGGAAGTGGATTTGGGCTCGGTGGAGGTCTAGGAGGAGGTCTAGGTGGAGGTCTTGGAGGAGGTCTAGGTGGAGGTCTTGGAGGAGGTCTAGGTGGAGGTCTTGGACTAGGACTCGGTGGAGGACTGGGTTTTGGAGCAGGAAGTTCCTTCGGTGCAGGAAGCAGTTTCATGTCCTCAAGCCTGAGCAGCAGTGGCTTGTCGTCCACTGTTTACTGAAGACTCTCAGCCTCCACTTATGAGGTTGTTTATTCATCAGCAACACCCCCATCAGCTCACACCTATCCAACGAGACGCCACAAAcctctacaacaacaacaaatatccATTGTGTTATTATCATTTTCTCTGAGGCTCAAAAAAAGGGTTTTTGCAAAATTGTGTTTCCTTGCATCACTTTCTTGTACAataaagaaaaatccatcctggtCATTACAAA
>TCONS_00037617
CACCGGGACTCCTGGACTCCAGCTCTGAGTGCAAAATGACAGAGTCAAGCTTGCGGATCAGTGGGGGCGCCGTCAGATTTGGAGCCACCTATGGAGGCAACCGTCTGTTCTCTGGAGCCCGGAGTGGTGGAGGCGCCAGCTCGGCTCTGTCCCGTTCACTCGGCCTGGCAAGGGGAGGAggtttgggtttaggttttggtgCTGGAGCCGGGGCCGTGGCCGGTGCAGGTGCTGGATTGGGCCTTGGCGGAGGTTCTCTGGCTCTCGGTGGTGGTCTTGGGTTAGGTGGTGGTCTTGGGTTGGGTGCCGGTGGTGCCAGAGCAGCAGGCGTCAGGGCTGGTGTGGCTCACCTGAGATCTCATCTGGGTGGCAGAGTGTTTAAAATCGGAGGCTACGGTTTTAACCCATCCTTCATCAGCTCTACCACCACAGTGGATGCAGGTGTCAGTCCGATGCCCAGCATTGACCCCTCGCTTCCATCACCAGACACAGTTCAGGTCACACGCATGAAGGAGAAGGAGGAACTGCAGGCCCTCAATGATAAATTTGCCTCATTTATTGATAAGGCACGGTCTCTGGAGCAGCACAATGCAGTACTCAGAGCCAAGATTTCTATGTTTACTAACCCGGAGCAGGGCGGACCTGCCAACACCTCCGTTCTTCTGACTTCTGCCATCGGGGCGTACAAATCTCAGATTGACAGCCTCTCTTCTACTAAAGAGGCCATAATTGCTGAGATTGAACACTTTAAAGCCATTATTGAGGACGATCAGGCCAGGTATGAAGAGGAAACCTCTCAAACCAAATCTCTGGAGCTTGACTGGACGGCGTTGAAAGAGGAAGTGGATAATCTGTACCTTACCCTCTTTGAGCTGCAGACCAGCATCTGTGGTTTGGAGGATCAAATTGCTCTGTCCAAGCAGGTGTATGATGCTAAAGTGAAAGAGGTGAGGACTATCGTGACTGGTGGAGTGAAGTCTGCCGTGTCGATCTCGGTGGATAATGCAGCCCAGGCACAGGACCTGACCTCAGCGCTGACCGAAGTCAAAGCTCACTATGAAACCCTGGCTCAACGCAGCAAGCAAGAAGCTCTGGTCTCAGTGCAGGACAGTCTCTCCATGATGTCTGTATCCTCGCAGCCTAGTTCTCAAACACTCACCTCAGCCAAAGACGAGCTCAGGGCTTACAAACTACAGATCGACTCTGTGCAGAGGGAGATCGAGAGGCTCAAGTCTCTGAACTTGCAGCTGGAGTCTCAGGTGGAGGAGGCCGAGTGTCACTCCAACTCTCATACAGAGACGTATCAGGATCAGGTTCTGACTCTCAAGTCTCAGCTTGATGATCTGAGGAAGCAAATCACTCAATACGGTCAGGAATATCAGGAGCTTCTGGCCAGCAAGATGTCTCTGGATGTGGAAATCACCGCCTATAAGAAGCTCCTGGACAGCGAGGAGAACAGGCTGAAGTCTGGAGGAGGAGTCACTGTGCACATGTCCAAGACTCTGCTTGGTGGAGGAGCAGGAGGAGCTGGAGGTCTGGGTGCAGGTGCAGGAGGCGCAGGTCTGGGTGGAGGTGCTGGTCTGGGTCTTGGAAGTGGATTTGGGCTCGGTGGAGGTCTAGGAGGAGGTCTAGGTGGAGGTCTAGGTGGAGGTCTTGGAGGAGGTCTAGGTGGAGGTCTTGGACTAGGACTCGGTGGAGGACTGGGTTTTGGAGCAGGAAGTTCCTTCGGTGCAGGAAGCAGTTTCATGTCCTCAAGCCTGAGCAGCAGTGGCTTGTCGTCCACTGTTTACTGAAGACTCTCAGCCTCCACTTATGAGGTTGTTTATTCATCAGCAACACCCCCATCAGCTCACACCTATCCAACGAGACGCCACAAAcctctacaacaacaacaaatatccATTGTGTTATTATCATTTTCTCTGAGGCTCAAAAAAAGGGTTTTTGCAAAATTGTGTTTCCTTGCATCACTTTCTTGTACAataaagaaaaatccatcctggtCATTACAAA

Function

symbol description
si:dkey-183i3.5 Predicted to be located in intermediate filament.

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8568 Predicted to be located in intermediate filament.

Ensembl:

ensembl_id ENSDARG00000056248

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037616 False 2044 mRNA 0.53 10 25187210 25197103
TCONS_00037617 True 2013 mRNA 0.53 11 25187229 25197103

Neighbor

gene id symbol gene type direction distance location
XLOC_018934 si:dkey-183i3.9 coding upstream 3780 25181003 ~ 25183430 (+)
XLOC_018933 ddx10 coding upstream 15426 25120546 ~ 25171784 (+)
XLOC_018932 dixdc1b coding upstream 67268 25068215 ~ 25119942 (+)
XLOC_018931 zgc:171740 coding upstream 124620 25054420 ~ 25062590 (+)
XLOC_018930 jam3b coding upstream 140219 24984970 ~ 25046991 (+)
XLOC_018936 si:dkey-183i3.6 coding downstream 1534 25198637 ~ 25206227 (+)
XLOC_018937 sycn.3 coding downstream 19294 25216397 ~ 25219305 (+)
XLOC_018938 sycn.1 coding downstream 24837 25221940 ~ 25222528 (+)
XLOC_018939 sycn.2 coding downstream 29455 25226558 ~ 25227191 (+)
XLOC_018940 gng8 coding downstream 34057 25231160 ~ 25235926 (+)
XLOC_018929 NA non-coding upstream 318298 24865149 ~ 24868912 (+)
XLOC_018928 BX510932.1 non-coding upstream 437431 24749662 ~ 24749779 (+)
XLOC_018927 BX510932.2 non-coding upstream 518873 24668221 ~ 24668337 (+)
XLOC_018926 CR759955.1 non-coding upstream 639610 24547524 ~ 24547600 (+)
XLOC_018924 NA non-coding upstream 685527 24456028 ~ 24501683 (+)
XLOC_018945 BX510938.2 non-coding downstream 148982 25346085 ~ 25346388 (+)
XLOC_018946 BX510938.5 non-coding downstream 149678 25346781 ~ 25347003 (+)
XLOC_018949 BX510938.4 non-coding downstream 168776 25365879 ~ 25366134 (+)
XLOC_018951 BX510938.3 non-coding downstream 179852 25376955 ~ 25377279 (+)
XLOC_018952 NA non-coding downstream 237586 25434689 ~ 25436244 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_04549705_04556474 NA coding CI01000006 null 4549543 ~ 4556516 (-)