CI01000006_04645532_04679353 (JAM3)


Basic Information

Item Value
gene id CI01000006_04645532_04679353
gene name JAM3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4645488 ~ 4679554 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04645532_04679353.mRNA
ACTGGCCTGGCGTGAAAAAAAAAAATCCTAAAACAAAACTATTCATGACGATGATGCTGTTTGTAGTCATGGAAACTCCACACAATAGCTCGACGTGCCTCTCTCTCACATCGGTTGGTGAGCGCGAGCTCTCTCCATCCTCTCCTAAAGCCCTTTACTTTGCGCATGTACAGCCAAACTGAACATTTCAGCGACTCCAAGATGGCGTTAACACCACTGGCTTGCGTTCTGCTTCTCCTTTCCATGCAATCAAATGGCTTTCTGGGGGTTCATGAAAAGCATGCTGGAACTTCTGGGCATGTCCATCAGTTACAGGCTGACATTTTTGATGTGTTCAGTAAGCGACAGAGAGAAATATGCACGGAAAAGATAGCCGTTCTCTGTGTGCTTTACCCAGGGCTGTTGCGGACAAAGACACGTTGCCCTTCCACACGTGCTTGGGTTCGTTTTAGCTGGAAGCAAAGGCTTAATGCAGATAAGCATCATGCAGTCAGTCAGGACATTAAGAATTGGCAGGCACGCACATCTGGATCAACCGATGCAAAATGTATGCTGCATAGTAATTGTGAAACGCAACAATATTCCCTCTTCAAAAACAGTCACCCCCAGGGTGCTCTTTTCACCTATCCCGTTGCATTCTGGGGCTTTTCCTTTGAACAGGAAGTGAAAAGGATTATGAGCATATCCCTGCTAAATCAACAAGTCTCCAGCGACAGTGGGGTGACGTCATCAGAAATCCAGAAACGTCACGATCTCATGTTGTTTAATGTCACGATTTACAGAGAAGAGAAGGTTTCTCTTTATGTTTCAAAGAGCACGCTTGTACTGCCACTGCTCCTGAAGAAGGCTCTGGCAGATATTACAGTCCTAATTAGGATTAAGGAAGAGGTCAGTGTGCTTGCACTAGAATGTGAGGCATTTGCAGAGAGTGGCGATGACGCCATCTGTGCTGAAAGCAGTGAGCGGCTAATTCTGGAACTGAGTGCAACACGATTTACAGATTTTGGGTTGGAGCCGCCTCACGGCGAATACGTGATCCTCCGATCAGCCGAAAACAATTTGAGACTTCACCTGACAGGACAGACCCTACATCATCGGGTGAGGTGTATGGAGGCAAACATTACTGACACAAGCTATGGTTTTTGTACCAGCCCCATATTTGATGACATGAGAATACAGGATGTGGCAGACAGAAAAAGGGAAAAGGAGACGAGAGATGCCGTCACCGCTTCCTGGCCGTCTAGTCACAGAGTGGTCAATGGCCTTTGTGTCCTCCATCTGGCTGGATGTGATTGTAAAAGAGGATGCTACATCAGCACCTTGGCAGTCATCCTCAAAACGACGAACGCTAAACCGTGGGTCAATGAGTTTGAATCAATCGAACTATCCTGCATGATAGAGTCGATCACCACTACTAGTCCCAGAATAGAATGGAAGAAGATTAAGAATGGAGAGCCCAGTTATGTATATTTTGAAAAGAAAATAGCAGGTGACCTGGAAAAGAGAGCAAAAATACGAGAACCCGCGACCTTAGTCATTCTCAACGCAACAAGATCTGACACTGCTGATTACCGCTGTGAAGTCACTGCCCCCAATGACCAAAAATCCTTTGATGAGATTTTGATATCACTCATTGTAAGAGGGCGTGTCCAGGGCTATATGAGGAAACCTCTGAAACTGCATCTGAGTTTAATCAGGGATCTAAAAGGGGAAAGAGCAGCATGTTCAGTTAGCCAGGATGCTTGCAGTCAGAGTCACTATGGTGCATTGAAGCCCGTCGTGCCCAGATGCTCCGTACCCCAGTCCGTCCCGGTGGGCAAACCAGCAGAACTGCATTGTGTGGAGGATGAGGGCTACCCGAAGTCCCAATACCAGTGGTTCCGTAACAAGGAGGAAATCCCAGAAGACCCCAAGAGCAGCCCAAAGTTCTTAAATTCCACTTACACCCTGGATGGAGAGATGGGCACTCTGAGTGCCATTCTCCGCCATTTGTACTCGGTGCCCTCGTCAACCTTCACACCACTTTTTAAAGTTTGGCCTGCACTGCAGTACAGCCTCTTCCCCCTAAGGAGACAACGTCTGAAGGCCCGACTGGGTCCTTTAAGATCTGCCAGAACCTTGTTTGACACCTCTGTCTTTTATAACGTCGCACCACAATCAGAGAGATGCTTCCAGAAATTCAGTGCGGTCAGGAAGGAGGATGCGGGAGAGTACTACTGCAGAGCCAAGAATGAGGCTGGGTTCTCTGAATGTGGATCGCAGATGATGGAAGTTTATGATATAAACATTGCTGGAATCGTCCTGGGTGTAGTGGTTGTGGTGACAGTCCTTTTGTGTATAACAGTGGGCATCTTCTGTGCCTATAAACGAGGCTACTTCACCAGCCAGAAGCAGACGGGAAACAATTACAAAGCTCCAGCAAAAGGAGATGGAGTGGACTATGTCAGAACAGAGGATGAGGGGGATTTCCGACACAAATCCTCATTTGTCATCTGAGAGGAGGAAGATGGGTGATGGAAGAGATTCAGAATTACATTAAA

Function

symbol description
jam3 Enables cell-cell adhesion mediator activity and integrin binding activity. Involved in several processes, including apical protein localization; hematopoietic stem cell migration to bone marrow; and negative regulation of integrin activation. Acts upstream of or within positive regulation of cellular extravasation and positive regulation of membrane permeability. Located in several cellular components, including cell-cell contact zone; desmosome; and microvillus. Is integral component of plasma membrane. Part of filamentous actin and protein complex involved in cell adhesion. Colocalizes with bicellular tight junction. Biomarker of systemic scleroderma.

GO: NA

KEGG:

id description
K06785 JAM3; junctional adhesion molecule 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04645532_04679353.mRNA True 2540 mRNA 0.47 16 4645488 4679554

Neighbor

gene id symbol gene type direction distance location
CI01000006_04633525_04639618 NA coding downstream 5870 4633423 ~ 4639618 (-)
CI01000006_04603018_04626532 DIXDC1B, DIXDC1 coding downstream 18956 4603018 ~ 4626532 (-)
CI01000006_04584782_04598738 DDX10, DDX10.L coding downstream 46077 4584782 ~ 4599411 (-)
CI01000006_04560607_04560993 NA coding downstream 83581 4559509 ~ 4562068 (-)
CI01000006_04549705_04556474 NA coding downstream 88972 4549543 ~ 4556516 (-)
CI01000006_04883687_04890017 NA coding upstream 203822 4883376 ~ 4890557 (-)
CI01000006_04987990_04988532 ANC13, ANAPC13.2.L, ANAPC13, ANAPC13.1 coding upstream 308265 4987819 ~ 4988879 (-)
CI01000006_05050241_05081653 NA coding upstream 370088 5049642 ~ 5081902 (-)
CI01000006_05096922_05124527 CADM1A, CADM1B, CADM1 coding upstream 417368 5096922 ~ 5124527 (-)
CI01000006_05264663_05267612 NA coding upstream 584565 5264119 ~ 5267873 (-)
G43664 NA non-coding downstream 82807 4562442 ~ 4562681 (-)
G43660 NA non-coding downstream 107671 4537584 ~ 4537817 (-)
G43610 NA non-coding downstream 140823 4501404 ~ 4504665 (-)
G43643 NA non-coding downstream 165866 4479408 ~ 4479622 (-)
G43628 NA non-coding downstream 207541 4433697 ~ 4437947 (-)
G43665 NA non-coding upstream 1060 4680614 ~ 4680828 (-)
G43706 NA non-coding upstream 137634 4817188 ~ 4832784 (-)
G43738 NA non-coding upstream 282680 4962234 ~ 4962754 (-)
G43769 NA non-coding upstream 310914 4990468 ~ 4992838 (-)
G43549 NA other downstream 290060 4352510 ~ 4355428 (-)
G43102 NA other downstream 1711504 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 2019302 2624436 ~ 2626776 (-)
G42934 NA other downstream 2063282 2523776 ~ 2582206 (-)
CI01000006_06974359_06976736 NA other upstream 2293670 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 2823591 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 5803302 10453613 ~ 10484006 (-)
G47658 NA other upstream 6351357 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 6970809 11650363 ~ 11654424 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018930 jam3b coding NC_007132.7 CM002905.2 24984970 ~ 25046991 (+)