CI01000006_04584782_04598738 (DDX10, DDX10.L)


Basic Information

Item Value
gene id CI01000006_04584782_04598738
gene name DDX10, DDX10.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4584782 ~ 4599411 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04584782_04598738.mRNA
AGAGAAGCTTGTAGCTAACAAGAACCATCTTAACTCACAATGGGTGGTGAGACAAGCGGCTGTATGAATTATTGAAATTCTGCTTTTACCCTCCTGATTACTGCTGTTTGCATTGCTGGTTTAAGAAGATTGTTATTTGGTTTGCAAATAAACAGTTTGAAGCAGTATACACTATGTATGTGTTTTTATTAAAAAAAAAAAAATTAATTGTTTTAACCCCCTAATTCTACATTCAATGATATATCTATATCCTATTTATGTATATCTTTGTTGATATTTGGAATAATAGCACTCATACAAAACTCATATTAGCATATATAACATGATCATTTTACATTTTAATGACTAAAATAACCACAAATCAACTATTTCTGAGTGGACCATTAGACCATAATATCCATTACGTAAATAAAAACAGTTACATTCTGCTACCCCATGATCTCTTCTATTTGAGAATGTATAAAATATGAATTATTTGAAATGTTAGCGGTAATTTGCGTTGTTTTGGACATCTCTGAGGTAACTCAATAAAAGCGTCTCACCGCTCCGGGTCATTAGATGGCGCTCATTCACTTAATCAGTAACGCTCACTGCGAGCAAAACATCTCGCGAAGCAAACATTCACGTGTTGTTACATTGGTACACACTACCTAGTCAACGAAATAGAGTGAAAATGCGGGTTAAAAAGAACAAAGAGAAGAAAAACATGATCGATGACCCTGTAAGGAATTTTGAGAAATGGAAAAAGAAGTACGATAAAACGAAAACCCGGATCAAACGAGTTCAAAAGCCCACTAGGAAGAAACGCGACTGGGAGGTGGAGAGAGAAAACATACAGAGACTGGTGAATAAATACTCGACGATCAATGCCAAAGAGGCTGTGAAGTTCTCTGATTTTCCACTCTCAAGAAAGACTCTAAACGGTCTTCTTGAGTGTCAGTACCGGCAGCCCACAGAGATTCAGAGGCAGACTATTGGCTTTGCTTTGCAAGGTAAAGATGTTCTTGGTGCTGCAAAGACGGGCTCTGGAAAGACTTTGGCCTTCCTCATCCCGGTTTTGGAGTGCTTGTATCGTGAACAGTGGACTGGGATGGACGGCCTCGGCGCTCTCATCATCTCTCCCACCCGAGAGCTGGCCTATCAGACCTTTGAGGTGTTGAGGAAGATCGGCAGGAACCATGAATTTTCTGCCGGCCTTATAATTGGTGGAAAGGATCTGAAAGATGAATCAGAGAAGATCCATCGCACAAATATCATTATCTGCACCCCAGGACGTCTGCTGCAGCACATGGACGAGAATGCCACATTTCATGCTTCAAATCTGCACATGCTTGTACTTGATGAAGCCGACAGGATTCTAGACATGGGTTTTGCTGAAACACTCAATGCCATTGTTGAAAACCTCCCGAAAACACGACAGACCCTTCTCTTCTCCGCCACTCAGACCAGGTCTGTCAAAGATCTGGCCAGACTGAGCCTGAAGAACCCAGAGTATGTGTGGGTCCATGAGCAGGCCAAGTTCAGTACTCCTGCAACTCTGGAACAGAACTATGTGGTGTGTGAGCTGCACCAGAAAGTCAACATGCTCTTCTCATTTATGAGGAGTCACCTTCAGAAGAAGATCATAGTCTTCTTTGCCTGTTGCAAAGAGGTTCAGTATCTGTTCCGGGTCTTCTGCCGGTTGCGTCCTGGTATCTCCGTTCTTGCTTTGCATGGGAAACAGCAGCAGATGAAGAGAGTGGAAGTTTACAATGACTTTGTCCGCAAGACCTCTGCAGTACTATTTGCCACAGATATCGCTGCCAGAGGACTTGACTTCCCTGCAGTGAACTGGGTGCTGCAGTTCGACTGTCCGGAAGATGCGAACACATACATTCACAGAGTTGGCAGAACAGCCAGGTATAAGGAAGGAGGTGAGGCGCTTCTGGTCCTGTTGCCCTCGGAGGAAAAGGGCATGATTGAACAGCTTCAAGAGAAAAAAGTTCCCATTAACAAAATCCAGGTGAATCCAGAGAAGTTGGTGTCGGTTCAGCAGAAGCTGGAGGCCTTTCTGGCACAGGAGATAGACCAGAAGGAGCGGGCGCAGAGGTGTTTCGTGTCCTACCTCCGCTCAGTCTATCTGATGAAGAACAAAGATGTCTTTGATGTTTTCCAGCTCAAACTCCAAGAATATGCCATGTCACTGGGTTTGGCAGTGGCGCCACGGGTCCGGTTCCTCATTAAGGCCCAGCAGCAAAAGAGTGGAGCGGCGCAGGACGACAGCGAGGAGGACGACGACCAGAACGATCTGGACCTTCTGACTGTCAAACGTAAAGATGTGTTCAATATCAATGAAGAGAGCGAAGACGATGAGGGTACAGATGCTAATGCCAAGAATAAGAAACTAAAAGAGACCAAATTCAAAGATGCAAAGAAAATACTGAAAAGAAACTTAAAGGTCAACACTAAGAAGGTCTTCACTGAGGAGGGAGAGGAGCTGCAGCAGTGGCCTCCGCTGCAGAGGACCATGGTACCAGATGAAGAGGATGACGAAGAGGTGTCTGGCATTAACGTGGAAGCAGCCAAAGAGCGGCTTCGCAAAGAAGACCAGGCGTTTGACAAGATTGAGTACCGTCGTAAAGTCCAGGAGAAACACAGG

Function

symbol description
ddx10 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Orthologous to human DDX10 (DEAD-box helicase 10).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04584782_04598738.mRNA True 2638 mRNA 0.44 16 4584782 4599411

Neighbor

gene id symbol gene type direction distance location
CI01000006_04560607_04560993 NA coding downstream 22875 4559509 ~ 4562068 (-)
CI01000006_04549705_04556474 NA coding downstream 28266 4549543 ~ 4556516 (-)
CI01000006_04535347_04535742 SYCN coding downstream 49029 4535217 ~ 4535753 (-)
CI01000006_04524286_04525219 TMEM45B coding downstream 58684 4523979 ~ 4526098 (-)
CI01000006_04484340_04489922 OR132-5, OR132-1 coding downstream 94860 4483810 ~ 4489922 (-)
CI01000006_04603018_04626532 DIXDC1B, DIXDC1 coding upstream 3607 4603018 ~ 4626532 (-)
CI01000006_04633525_04639618 NA coding upstream 34012 4633423 ~ 4639618 (-)
CI01000006_04645532_04679353 JAM3 coding upstream 46077 4645488 ~ 4679554 (-)
CI01000006_04883687_04890017 NA coding upstream 283965 4883376 ~ 4890557 (-)
CI01000006_04987990_04988532 ANC13, ANAPC13.2.L, ANAPC13, ANAPC13.1 coding upstream 388408 4987819 ~ 4988879 (-)
G43664 NA non-coding downstream 22101 4562442 ~ 4562681 (-)
G43660 NA non-coding downstream 46965 4537584 ~ 4537817 (-)
G43610 NA non-coding downstream 80117 4501404 ~ 4504665 (-)
G43643 NA non-coding downstream 105160 4479408 ~ 4479622 (-)
G43628 NA non-coding downstream 146835 4433697 ~ 4437947 (-)
G43665 NA non-coding upstream 81203 4680614 ~ 4680828 (-)
G43706 NA non-coding upstream 217777 4817188 ~ 4832784 (-)
G43738 NA non-coding upstream 362823 4962234 ~ 4962754 (-)
G43769 NA non-coding upstream 391057 4990468 ~ 4992838 (-)
G43549 NA other downstream 229354 4352510 ~ 4355428 (-)
G43102 NA other downstream 1650798 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 1958596 2624436 ~ 2626776 (-)
G42934 NA other downstream 2002576 2523776 ~ 2582206 (-)
CI01000006_06974359_06976736 NA other upstream 2373813 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 2903734 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 5883445 10453613 ~ 10484006 (-)
G47658 NA other upstream 6431500 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 7050952 11650363 ~ 11654424 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location