G43706


Basic Information

Item Value
gene id G43706
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4817188 ~ 4832784 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU49623
CTTCTCTATCCGCAGAGGCAGGCCATCTTTTTTCCACTTCACTGAAGTGACAGGCGGGTTGGCATCCACCGGGCAGCGGATGTACCCCGGCAGTCCGATGGCCACGTAAATAACGGGCGGCATGTTTATCACACGGGCAGGGTAATGCACTGTCAGGTATGCTGATGCAGAAGGTGGGCGGCCAAGGCTGTTACTCGGGCTGCAGGTGTATCTACCAGCATCCTCAGGTTTCACCTGGGAGATGATGAGCGAACCGTCGATCAGAATACTCACTCTGCGCTTTAGATCATTCTTGAAGAAGACGTTATCTTCCTCCCAGAACCAGGTGTACGTTAGGTTGCCAGGATATGCCTCAGCCTGACAAGTGAAGAATGCATCCTGGGATATGTTTACGGTTATGTTCTCTGGTGGTGAGACAATAAATGGGGGTCCTTGGACGAGTAAGCGTGTGGTATGGATGGCCTCTCCCTGCTCGCTGTACGCTCGGCATGTGTACGCTCCCCTGTCCTCACGGCTGATGGAAACAAGTGTCAAGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU49623 True 537 lncRNA 0.52 4 4817188 4832784

Neighbor

gene id symbol gene type direction distance location
CI01000006_04645532_04679353 JAM3 coding downstream 137634 4645488 ~ 4679554 (-)
CI01000006_04633525_04639618 NA coding downstream 177570 4633423 ~ 4639618 (-)
CI01000006_04603018_04626532 DIXDC1B, DIXDC1 coding downstream 190656 4603018 ~ 4626532 (-)
CI01000006_04584782_04598738 DDX10, DDX10.L coding downstream 217777 4584782 ~ 4599411 (-)
CI01000006_04560607_04560993 NA coding downstream 255281 4559509 ~ 4562068 (-)
CI01000006_04883687_04890017 NA coding upstream 50592 4883376 ~ 4890557 (-)
CI01000006_04987990_04988532 ANC13, ANAPC13.2.L, ANAPC13, ANAPC13.1 coding upstream 155035 4987819 ~ 4988879 (-)
CI01000006_05050241_05081653 NA coding upstream 216858 5049642 ~ 5081902 (-)
CI01000006_05096922_05124527 CADM1A, CADM1B, CADM1 coding upstream 264138 5096922 ~ 5124527 (-)
CI01000006_05264663_05267612 NA coding upstream 431335 5264119 ~ 5267873 (-)
G43665 NA non-coding downstream 136360 4680614 ~ 4680828 (-)
G43664 NA non-coding downstream 254507 4562442 ~ 4562681 (-)
G43660 NA non-coding downstream 279371 4537584 ~ 4537817 (-)
G43610 NA non-coding downstream 312523 4501404 ~ 4504665 (-)
G43643 NA non-coding downstream 337566 4479408 ~ 4479622 (-)
G43738 NA non-coding upstream 129450 4962234 ~ 4962754 (-)
G43769 NA non-coding upstream 157684 4990468 ~ 4992838 (-)
G43773 NA non-coding upstream 190427 5023211 ~ 5025898 (-)
G43549 NA other downstream 461760 4352510 ~ 4355428 (-)
G43102 NA other downstream 1883204 2908451 ~ 2933984 (-)
CI01000006_02624725_02626124 COX8A other downstream 2191002 2624436 ~ 2626776 (-)
G42934 NA other downstream 2234982 2523776 ~ 2582206 (-)
CI01000006_06974359_06976736 NA other upstream 2140440 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 2670361 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 5650072 10453613 ~ 10484006 (-)
G47658 NA other upstream 6198127 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 6817579 11650363 ~ 11654424 (-)

Expression


Co-expression Network