XLOC_018947 (or132-4)


Basic Information

Item Value
gene id XLOC_018947
gene name or132-4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25354106 ~ 25356174 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037632
AAGACGTACTGCACAAATGTCACATTAATATCTAAACTGTGAAGCAGAAACATTTCTTTAGGCAGGATCATCAGTATAACTGCTTCATTTTTTTCTGTCTTGTTTGTCTGTTTCTTGTTTTTCAGCTAATGGACTCCAATGGCACAAGTGGTGATGCGTCCTTCCTTCACCAGCAAGTATTTCAGCTGGATTGGGATTTTCTCACCATTAGTAAAACTATGTTGGCTGTGTTAACATCTCTATTTTTCGTCTTTGTCAACTGCGTGATGTTCTATGCTTTAAAAAGCAAGCACATATTCTTTGAGACGCCACGCTATATACTTTTTGGCCACATGCTTATGAATGACTCTGTGCTTTTGCTGCTAACAACTGTCACATTCATGTTGGCTCTGTGTTTTTATCCAATACAAAAATCCATATGTACTCTGTTAGTCTTCATTACTCACTGCGCTTTCCGTAATGCTCCTCTGACTCTAGCACTGATGTCTCTAGAGCGTTATGTGGCAATCTGCTTCCCTCTGAGACACTGCACCATCGCCACACCTAAAAGAACTGGAATCGCCATTGGAATCATCTGGTTTCTAAGTTCTGTAAATGTTATTATAGATATTATTATTGCTTTAGTTAATAACCCCTATGTTTTAGCAGAAGTTGCATTTTGCACGCTAGAGAAATTGTATATAGCCAAATGGCAGGTGGACAAAGCTCAGTGGTTTGATGTGCTTTATTTTGTGTCAGTTGCAGTGATCATTGTATTCACATATATCATGATTATGATCACAGCCAGGTCTGTTTCATCTGATAAAGATTCTGCTAAAAAAGCCCTGAAAACAGTGATGTTGCACTTGATTCAGCTGGGACTGTGTCTCACCTCTTTTTTATTTGCCACAATAGAGATAATAATATACAAGATGATAGGAGGCACATCAcctctctttattaatctgagatatttaaatttttttgttgttcttatTATACCACGTTGTATGAGTCCTCTGATCTATGGCATGAGAGATGAAGCCGTGTGGCCCTTGTTCAAATATTACTTCTGCTATCGCTCAGGCAAAGTAAAGCCCTCTGTTAATGTGCATTAATCACATGGTCTGAGAGGATTagaaataataatgtcaaataaaatgcACTTTATGTGACTAAGTATTATTTGGCATTTAATATTAAGTTTgatgtaaattattaattaagtCTTCAAAAACTTTCATTGTTAacttatgttaatattttaattttgaatgtGGTTTTAAACAGATTTTGAGTTATCTGGAGTTCATAAATATCACAATTGTTTTTCAGGctcaatttattttttgtcttaaaCCTGTAAGGCCCTCAAGAAAGTATTTGAAAGCATACAGTATTATCTGCCAAACTATTAGTTTCAATTGCTGAAAAAAAAGCCAGTGATATACACATATGCAAATAATTGcgtacattattttatttatattttaatttggtcTGTTTACTTTTCATGTCTGTATTTCTAATTTTGTCTTGTATAATATAACAGCtgctacttaaaaaaaataaaattgcctTGCTGCTAAAATAACATCTCGTCTCTATATAAGTACATTAGCCAAATGTCAGATTGCTGATCATTATATTCACATATATCAACATTACGATAACAGAAAAAAGGCCCAAAATAAAATAGCCCTCAGAACAATGAGCTGCCTAATATTACACACTGTCCTTATGTGCGTCTTATTCACTCTGCTTTGTGTTAGACGTAATGTTCTTTTGTTCTGTGTTCTGCCACTAGTTAATTTTCATGTTAACTAACTTAGTTTGCTCTGCTCATTATCTGCTAATGCTTATACTTATTGGATGGTTATCTTTACCCCTGTGGATTTACTAAAATTATCTTATTTCCTACTATTTTATAGTATGCATGCATCCCTTAGTCCACATGATAGCCTGTTGTTTGAAGAAtgattataaacaaaaataaataataagtgtaCAGGCATTTGCCCGGAATGACTTTAGCACAAGGTTATTGTTCAGGTTTAATATCTGTTGTGTCTTAAACTTGTGAAGGCCCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0030425 dendrite cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-50 Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000105719

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037632 True 2069 mRNA 0.34 1 25354106 25356174

Neighbor

gene id symbol gene type direction distance location
XLOC_018946 BX510938.5 coding upstream 7103 25346781 ~ 25347003 (+)
XLOC_018945 BX510938.2 coding upstream 7718 25346085 ~ 25346388 (+)
XLOC_018944 or132-2 coding upstream 8204 25344374 ~ 25345902 (+)
XLOC_018943 or132-2 coding upstream 15419 25335807 ~ 25338687 (+)
XLOC_018942 or132-1 coding upstream 28261 25323331 ~ 25325845 (+)
XLOC_018948 or132-3 coding downstream 8164 25364338 ~ 25365870 (+)
XLOC_018949 BX510938.4 coding downstream 9705 25365879 ~ 25366134 (+)
XLOC_018950 or132-5 coding downstream 18998 25375172 ~ 25376738 (+)
XLOC_018951 BX510938.3 coding downstream 20781 25376955 ~ 25377279 (+)
XLOC_018952 NA coding downstream 78515 25434689 ~ 25436244 (+)
XLOC_018929 NA non-coding upstream 485194 24865149 ~ 24868912 (+)
XLOC_018928 BX510932.1 non-coding upstream 604327 24749662 ~ 24749779 (+)
XLOC_018927 BX510932.2 non-coding upstream 685769 24668221 ~ 24668337 (+)
XLOC_018954 NA non-coding downstream 229552 25585726 ~ 25586281 (+)
XLOC_018957 NA non-coding downstream 304063 25660237 ~ 25664660 (+)

Expression


Co-expression Network