XLOC_019003 (puraa)


Basic Information

Item Value
gene id XLOC_019003
gene name puraa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 28724099 ~ 28729125 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037713
GACTCGCTCTTTCGTTCCATCTTGTGAACGGCGCATCGGTGAAGCAGCACCGCGACAGTGTTTACAGTAGGCCTTCGGGGCTTACAGATTTTCATCTTTGTTTCTGACTGTGTTCAACTGCGAAGGGCTTGCACAGCGGGCTAAAGCTCTGCCTGCAGACTGAGCGGGATCTCGCGAGAGCGGTGGCGTGGCTGCTTGGCTGTAGGCTTGCAGTAAGACTGAGGGAGAAGGCAGGCAGCATCATGGCGGACAGAGACAGTGGAAGTGAGCAGGGAGGAGCAGCCACGGGCCCGGGTGTCGGTTCCATGCACCCAGTGACAGGAGGGGCGGGCTCGGCTTCCGGGCTGCAGCACGAGACGCAGGAGCTCGCCTCGAAGCGGGTTGACATCCAGAACAAACGCTTTTATCTGGACGTAAAGCAGAACGCGAAAGGCCGCTTCTTGAAAATAGCAGAAGTCGGGGCCGGAGGAAACAAGAGCCGCCTCACTCTCTCCATGTCCGTGGCTGTCGAGTTCCGCGACTATCTGGGGGACTTCATCGAGCACTATGCCCAGTTAGGGCCGAGCAATCCGGACATGCCACAGGACGAGCCACGGCGGGCGCTGAAGAGTGAGTTTCTGGTCCGGGAGAATCGGAAGTACTACATGGATCTGAAGGAGAACCAGAGGGGCCGCTTTCTGAGGATTCGGCAGACTGTCAACCGGGGGCCCGGTTTGGGATCCACGCAAGGCCAGACCATTGCTCTTCCAGCCCAGGGACTAATCGAATTTCGCGACGCACTCGCCAAACTCATTGACGACTACGGAGTGGAGGACGAGCCGGCGGAGCTGCCGGAGGGAACCTCGTTAACTGTGGACAACAAGCGCTTTTTCTTTGACGTGGGCTCCAATAAGTACGGGGTGTTCATGAGGGTAAGCGAGGTCAAGCCCACCTATCGCAACTCTATCACAGTGCCCTACAAAGTGTGGTCGAAATTCGGCAGCACTTTCTGTAAATACGCAGATGAAATGAAAAAGATTCAAGAGAAACAGAGGGAAAAAAGGGCATGCGAGCTTCAGCAGCAACAGCAAGAGGAGATGCACGGCGACGACGGGGATGAGGATTGATAGTGGAGggaaacatgcaaaaaaa
>TCONS_00037714
ACCACCTAATCTTCCAGGACAGACGCGCCGTGCGACTAGAGCGTGCGGACGCAGAGTTAGAGCTTCAGTACGCGGCGAGTTTTTTCGGATTCTGCACAGGTCTGAACAGCGCTCGTCTTCTCTCCTCACACAGATCTCGCGAGAGCGGTGGCGTGGCTGCTTGGCTGTAGGCTTGCAGTAAGACTGAGGGAGAAGGCAGGCAGCATCATGGCGGACAGAGACAGTGGAAGTGAGCAGGGAGGAGCAGCCACGGGCCCGGGTGTCGGTTCCATGCACCCAGTGACAGGAGGGGCGGGCTCGGCTTCCGGGCTGCAGCACGAGACGCAGGAGCTCGCCTCGAAGCGGGTTGACATCCAGAACAAACGCTTTTATCTGGACGTAAAGCAGAACGCGAAAGGCCGCTTCTTGAAAATAGCAGAAGTCGGGGCCGGAGGAAACAAGAGCCGCCTCACTCTCTCCATGTCCGTGGCTGTCGAGTTCCGCGACTATCTGGGGGACTTCATCGAGCACTATGCCCAGTTAGGGCCGAGCAATCCGGACATGCCACAGGACGAGCCACGGCGGGCGCTGAAGAGTGAGTTTCTGGTCCGGGAGAATCGGAAGTACTACATGGATCTGAAGGAGAACCAGAGGGGCCGCTTTCTGAGGATTCGGCAGACTGTCAACCGGGGGCCCGGTTTGGGATCCACGCAAGGCCAGACCATTGCTCTTCCAGCCCAGGGACTAATCGAATTTCGCGACGCACTCGCCAAACTCATTGACGACTACGGAGTGGAGGACGAGCCGGCGGAGCTGCCGGAGGGAACCTCGTTAACTGTGGACAACAAGCGCTTTTTCTTTGACGTGGGCTCCAATAAGTACGGGGTGTTCATGAGGGTAAGCGAGGTCAAGCCCACCTATCGCAACTCTATCACAGTGCCCTACAAAGTGTGGTCGAAATTCGGCAGCACTTTCTGTAAATACGCAGATGAAATGAAAAAGATTCAAGAGAAACAGAGGGAAAAAAGGGCATGCGAGCTTCAGCAGCAACAGCAAGAGGAGATGCACGGCGACGACGGGGATGAGGATTGATAGTGGAGggaaacatgcaaaaaaa

Function

symbol description
puraa Enables double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell differentiation; negative regulation of transcription, DNA-templated; and regulation of cell population proliferation. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 31. Orthologous to human PURA (purine rich element binding protein A).

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0032422 purine-rich negative regulatory element binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040624-8 Enables double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell differentiation; negative regulation of transcription, DNA-templated; and regulation of cell population proliferation. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 31. Orthologous to human PURA (purine rich element binding protein A).

Ensembl:

ensembl_id ENSDARG00000067591

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037713 False 1131 mRNA 0.56 2 28724099 28729125
TCONS_00037714 True 1096 mRNA 0.57 1 28728030 28729125

Neighbor

gene id symbol gene type direction distance location
XLOC_019002 CR749775.3 coding upstream 156005 28535203 ~ 28568094 (+)
XLOC_019001 otub1a coding upstream 211044 28502340 ~ 28513055 (+)
XLOC_019000 cox8a coding upstream 223395 28496194 ~ 28500704 (+)
XLOC_018998 slc22a6l coding upstream 229777 28478663 ~ 28494322 (+)
XLOC_018999 CR749775.1 coding upstream 232340 28491642 ~ 28491759 (+)
XLOC_019004 zgc:100829 coding downstream 17944 28747069 ~ 28794078 (+)
XLOC_019005 NA coding downstream 87458 28816583 ~ 28827128 (+)
XLOC_019006 NA coding downstream 210738 28939863 ~ 28943876 (+)
XLOC_019007 ppp3ca coding downstream 229346 28958471 ~ 29075815 (+)
XLOC_019008 ecscr coding downstream 348384 29077509 ~ 29088928 (+)
XLOC_018996 NA non-coding upstream 867732 27856092 ~ 27856367 (+)
XLOC_018995 NA non-coding upstream 1097300 27614988 ~ 27626799 (+)
XLOC_018986 BX530031.1 non-coding upstream 1388838 27335125 ~ 27335261 (+)
XLOC_018980 NA non-coding upstream 1902984 26819062 ~ 26821115 (+)
XLOC_019009 CU463029.1 non-coding downstream 376873 29105998 ~ 29106120 (+)
XLOC_019012 NA non-coding downstream 557115 29286240 ~ 29317094 (+)
XLOC_019013 NA non-coding downstream 568032 29297157 ~ 29328497 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_02481958_02482821 PURA, PURAB, PURAA, PURA.L coding CI01000006 null 2481395 ~ 2483128 (-)
bowfin (Amia calva) AMCG00011549 pura,LOC106563647,LOC105894349,LOC106603021,LOC107684715,LOC107693725 coding CM030133.1 CM030133.1 30533888 ~ 30534748 (-)