XLOC_019008 (ecscr)


Basic Information

Item Value
gene id XLOC_019008
gene name ecscr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 29077509 ~ 29088928 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037721
GCTCGAGTCCCGCTGAACACACCCAAACACACGCTCCTCTGCGGGACTCTCAATACTATGAGCTTGCCCTCGTGTGTTACCATTACACCCTACAGGAAATCGACCTGGACATGCTGGTTTATACCTCAGCAAAATACATTAAGATACAAcaattatattgtaattattccCAGATATATGGATTGAACGTCATTTGGACTTAGCCATGGAGAAACTGCTCTTTTTTCTCATTCCCCTGATTACATTTTCATCCATCATCTCAGCAGGAAATGACACAAACCTCACAAGTCCCACACCTCCAAGCACAGTTTTTTCACCTACAAACTCTGTTAATTTAACAGAAGcAGCGCAACAGATTGAAAATTCAACTACATATGACGATGACATAAGCAACCAGACCTCAAAACCGACAACTGTTCAATTTTCCAGAAGCACAGGAGAGTCCACCAGCAGCTCCAGTTTTATAAGATCCACAACTCCAACAACGATATCAAAATTCTACACCGACACATCGCTAAATGGAGTCTCAGCATCAGCGACCAAAATAACAGAGGCTGTTTCTTCAACGACAGTTTTTTCCAACATCAGCATGTCAGAGGCAACAGCGACTCCTTCACCAGCAGAAAGCAGACTCACTTTACTAGCCTTTGGTGTGATGAGTCTCATACTGATTTTGATTGTTGTTATGGTGATCTTGGTCGCCGCTGTCAACCTCAAGGGACGCTGTTGTAGAAACACCCAACAACACGAGAGTATTAAAAACCGTGATTCTTTGGTGTCTGACAGCAACCTGACCAGCAATGGGGAGAAGGAAAACATCACTCTTGTCTCTGTGAGGACAATAAACACAGAATACAATGCAGATTCTCCCCAGATTTCTTCAGTTCACAGCACTATAGTGGACAATGATGACCATGAACTTTCCAGAGACCAGCTGATTTCACTGGGTTCATGATGCATGGAGATTGGAGGCTGTGTGCTTATctgatttatttgtaattttggcTGAATGTGGATTATTGCGCCTTTAGTTGATGGTTATTGAACACATCATGCTCATGATGTACATTGGTGCAaatcaaatcatcattataccTGCAGGGctttcatttattgaaaatgacaCATGCTTCAATATTCTgcaaaatgtcactttttgtgCTCCTCTTTTTCATATAAAGCAGTGCATTTGTGACTctgaaccacaaaaccagtcaaaagGTTGTTTTCAGAAAATCtgaaagttgaataaataagTTTACCTTTGATTTACGGTTTGTTAAGAGAGGACAATT

Function

symbol description
ecscr Acts upstream of or within angioblast cell migration from lateral mesoderm to midline. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in angioblastic mesenchymal cell; axial blood vessel; mesoderm; and primordial vasculature. Orthologous to human ECSCR (endothelial cell surface expressed chemotaxis and apoptosis regulator).

GO:

id name namespace
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050411-37 Acts upstream of or within angioblast cell migration from lateral mesoderm to midline. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in angioblastic mesenchymal cell; axial blood vessel; mesoderm; and primordial vasculature. Orthologous to human ECSCR (endothelial cell surface expressed chemotaxis and apoptosis regulator).

Ensembl:

ensembl_id ENSDARG00000087457

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037721 True 1295 mRNA 0.41 9 29077509 29088928

Neighbor

gene id symbol gene type direction distance location
XLOC_019007 ppp3ca coding upstream 1694 28958471 ~ 29075815 (+)
XLOC_019006 NA coding upstream 133633 28939863 ~ 28943876 (+)
XLOC_019005 NA coding upstream 250381 28816583 ~ 28827128 (+)
XLOC_019004 zgc:100829 coding upstream 283431 28747069 ~ 28794078 (+)
XLOC_019003 puraa coding upstream 348384 28724099 ~ 28729125 (+)
XLOC_019009 CU463029.1 coding downstream 17070 29105998 ~ 29106120 (+)
XLOC_019010 si:ch211-57b15.1 coding downstream 90959 29179887 ~ 29186128 (+)
XLOC_019011 adra1ba coding downstream 138296 29227224 ~ 29247942 (+)
XLOC_019012 NA coding downstream 197312 29286240 ~ 29317094 (+)
XLOC_019013 NA coding downstream 208229 29297157 ~ 29328497 (+)
XLOC_018999 CR749775.1 non-coding upstream 585750 28491642 ~ 28491759 (+)
XLOC_018996 NA non-coding upstream 1221142 27856092 ~ 27856367 (+)
XLOC_018995 NA non-coding upstream 1450710 27614988 ~ 27626799 (+)
XLOC_019014 CR847571.3 non-coding downstream 517399 29606327 ~ 29606450 (+)
XLOC_019015 CU855895.2 non-coding downstream 897868 29986796 ~ 29986896 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G42837 NA unknown CI01000006 null 2284832 ~ 2290690 (-)
eurasian perch (Perca fluviatilis) G36288 NA non-coding NC_053115.1 CM020912.1 6543467 ~ 6544074 (+)