RNA id: TCONS_00037721


Basic Information

Item Value
RNA id TCONS_00037721
length 1295
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_019008
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 29077509 ~ 29088928 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCGAGTCCCGCTGAACACACCCAAACACACGCTCCTCTGCGGGACTCTCAATACTATGAGCTTGCCCTCGTGTGTTACCATTACACCCTACAGGAAATCGACCTGGACATGCTGGTTTATACCTCAGCAAAATACATTAAGATACAAcaattatattgtaattattccCAGATATATGGATTGAACGTCATTTGGACTTAGCCATGGAGAAACTGCTCTTTTTTCTCATTCCCCTGATTACATTTTCATCCATCATCTCAGCAGGAAATGACACAAACCTCACAAGTCCCACACCTCCAAGCACAGTTTTTTCACCTACAAACTCTGTTAATTTAACAGAAGcAGCGCAACAGATTGAAAATTCAACTACATATGACGATGACATAAGCAACCAGACCTCAAAACCGACAACTGTTCAATTTTCCAGAAGCACAGGAGAGTCCACCAGCAGCTCCAGTTTTATAAGATCCACAACTCCAACAACGATATCAAAATTCTACACCGACACATCGCTAAATGGAGTCTCAGCATCAGCGACCAAAATAACAGAGGCTGTTTCTTCAACGACAGTTTTTTCCAACATCAGCATGTCAGAGGCAACAGCGACTCCTTCACCAGCAGAAAGCAGACTCACTTTACTAGCCTTTGGTGTGATGAGTCTCATACTGATTTTGATTGTTGTTATGGTGATCTTGGTCGCCGCTGTCAACCTCAAGGGACGCTGTTGTAGAAACACCCAACAACACGAGAGTATTAAAAACCGTGATTCTTTGGTGTCTGACAGCAACCTGACCAGCAATGGGGAGAAGGAAAACATCACTCTTGTCTCTGTGAGGACAATAAACACAGAATACAATGCAGATTCTCCCCAGATTTCTTCAGTTCACAGCACTATAGTGGACAATGATGACCATGAACTTTCCAGAGACCAGCTGATTTCACTGGGTTCATGATGCATGGAGATTGGAGGCTGTGTGCTTATctgatttatttgtaattttggcTGAATGTGGATTATTGCGCCTTTAGTTGATGGTTATTGAACACATCATGCTCATGATGTACATTGGTGCAaatcaaatcatcattataccTGCAGGGctttcatttattgaaaatgacaCATGCTTCAATATTCTgcaaaatgtcactttttgtgCTCCTCTTTTTCATATAAAGCAGTGCATTTGTGACTctgaaccacaaaaccagtcaaaagGTTGTTTTCAGAAAATCtgaaagttgaataaataagTTTACCTTTGATTTACGGTTTGTTAAGAGAGGACAATT

Function

GO:

id name namespace
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050411-37 Acts upstream of or within angioblast cell migration from lateral mesoderm to midline. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in angioblastic mesenchymal cell; axial blood vessel; mesoderm; and primordial vasculature. Orthologous to human ECSCR (endothelial cell surface expressed chemotaxis and apoptosis regulator).

Ensembl:

ensembl_id ENSDART00000128561

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039422 lncRNA upstream 133633 28939863 ~ 28943876 (+) True XLOC_019006
TCONS_00039420 lncRNA upstream 250381 28816583 ~ 28827128 (+) False XLOC_019005
TCONS_00039421 lncRNA upstream 250381 28821411 ~ 28827128 (+) True XLOC_019005
TCONS_00037711 lncRNA upstream 567178 28507268 ~ 28510331 (+) True XLOC_019001
TCONS_00037709 lncRNA upstream 572514 28502350 ~ 28504995 (+) False XLOC_019001
TCONS_00039423 lncRNA downstream 197312 29286240 ~ 29317094 (+) True XLOC_019012
TCONS_00039424 lncRNA downstream 208229 29297157 ~ 29328497 (+) True XLOC_019013
TCONS_00039425 lncRNA downstream 934005 30022933 ~ 30027629 (+) True XLOC_019017
TCONS_00039426 lncRNA downstream 1074971 30163899 ~ 30183554 (+) True XLOC_019020
TCONS_00039173 lncRNA downstream 1095381 30184309 ~ 30186321 (+) True XLOC_019021
TCONS_00037720 mRNA upstream 1694 28958472 ~ 29075815 (+) True XLOC_019007
TCONS_00037719 mRNA upstream 3092 28958471 ~ 29074417 (+) False XLOC_019007
TCONS_00037715 mRNA upstream 283431 28747069 ~ 28794078 (+) False XLOC_019004
TCONS_00037716 mRNA upstream 304867 28747236 ~ 28772642 (+) False XLOC_019004
TCONS_00037717 mRNA upstream 304868 28749720 ~ 28772641 (+) False XLOC_019004
TCONS_00037723 mRNA downstream 90959 29179887 ~ 29186128 (+) True XLOC_019010
TCONS_00037724 mRNA downstream 138296 29227224 ~ 29247942 (+) True XLOC_019011
TCONS_00037727 mRNA downstream 918638 30007566 ~ 30019626 (+) False XLOC_019016
TCONS_00037728 mRNA downstream 918649 30007577 ~ 30010635 (+) False XLOC_019016
TCONS_00037729 mRNA downstream 921133 30010061 ~ 30018988 (+) True XLOC_019016
TCONS_00037718 other upstream 283431 28792557 ~ 28794078 (+) True XLOC_019004
TCONS_00037704 other upstream 585750 28491642 ~ 28491759 (+) True XLOC_018999
TCONS_00037687 other upstream 1742248 27335125 ~ 27335261 (+) True XLOC_018986
TCONS_00037666 other upstream 2550897 26523095 ~ 26526612 (+) True XLOC_018971
TCONS_00037661 other upstream 2897494 26179899 ~ 26180015 (+) True XLOC_018967
TCONS_00037722 other downstream 17070 29105998 ~ 29106120 (+) True XLOC_019009
TCONS_00037725 other downstream 517399 29606327 ~ 29606450 (+) True XLOC_019014
TCONS_00037726 other downstream 897868 29986796 ~ 29986896 (+) True XLOC_019015
TCONS_00037768 other downstream 2941708 32030636 ~ 32030752 (+) True XLOC_019040
TCONS_00037769 other downstream 3003843 32092771 ~ 32098427 (+) False XLOC_019042

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU48637 True 65 TUCP 0.36 2 CI01000006 2284832 ~ 2290690 (-)
eurasian perch (Perca fluviatilis) TU48637 True 608 lncRNA 0.34 1 NC_053115.1 6543467 ~ 6544074 (+)