XLOC_019030 (si:ch211-200p22.4)


Basic Information

Item Value
gene id XLOC_019030
gene name si:ch211-200p22.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30563115 ~ 30583086 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037749
ATGTCGGGACAGTCCATCACGGACCGGATCGCCGCGGCTCAGCACAGCATGACCGGATCTGCGATCAGCAAAGCCGTGTGCAAGGCCACGACGCACGAAGTCAGCGCGCCCAAGAAGAAGCACCTTGATTATCTAATGCACTGCACCAATGATGTGAACGTGAATATACCTCACTTGGCTGACACATTGTTTGAGAGGACAGCAAATCAAAGCTGGGTGGTGGTCTTTAAAGCTCTCATAACTACACACCACCTCATGATGTACGGCAATGAGAGGTTTATCCAGTACCTTGCATCAAGAAGCACACTCTTTAACTTGAATAATTTCGTAGATAAAGGCGCATTACAAGGTTATGATATGTCCATCTACATTAGACGCTACAGCAGGTATCTGACCGAAAGGGCTCTGTCCTACAGACTCGTCGCAGCTGATTTCACCAAGATGAAGAGAGGGACTGATGGAGTGATGCGCACCATGAGCATAGAGAAGCTGATGAAGACTCTACCTATCACTCAGAATCAGCTCGATGCCCTTTTGGACTTTGAGGCCAGCTCTACTGAACTGACCAATGGAGTGATCAATTGTGCCTTCACGCTGCTCTTCAAGGACTCGATCCGCATCTTTGCTGCTTACAATGAGGGAGTCATTAATCTGCTAGagaaatattttaatatgaagaAGAATCAGTGCAAAGAGGCGCTGGAAATATACAAGAGGTTTCTCGTCAGGATGACCAAGCTCTCCGAGTTTCTCAAGGTGGCCGAGCAAGTTGGAATTGATCAGGTTGACATCCCAGATCTCTCACAGGCTCCCAGCAGTCTCTTAGAAGCTCTCGAACAACATCTGGCTTCTCTGGAGGGAAAGAAAATGAAAGACGCCTCTACTGTCAGCAGGTACTTGAATTCATCATGGGATTCGCTGTACGGGTCAATGACAAATATGTcgggatga

Function

symbol description
si:ch211-200p22.4 Predicted to enable SNARE binding activity; clathrin heavy chain binding activity; and phosphatidylinositol binding activity. Predicted to be involved in clathrin-dependent endocytosis and synaptic vesicle budding from presynaptic endocytic zone membrane. Predicted to act upstream of or within clathrin coat assembly. Predicted to be active in clathrin-coated pit; clathrin-coated vesicle; and synaptic vesicle. Predicted to be extrinsic component of presynaptic endocytic zone membrane.

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006900 vesicle budding from membrane biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0030136 clathrin-coated vesicle cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0098894 extrinsic component of presynaptic endocytic zone membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0032050 clathrin heavy chain binding molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0005545 1-phosphatidylinositol binding molecular_function
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-61 Predicted to enable SNARE binding activity; clathrin heavy chain binding activity; and phosphatidylinositol binding activity. Predicted to be involved in clathrin-dependent endocytosis and synaptic vesicle budding from presynaptic endocytic zone membrane. Predicted to act upstream of or within clathrin coat assembly. Predicted to be active in clathrin-coated pit; clathrin-coated vesicle; and synaptic vesicle. Predicted to be extrinsic component of presynaptic endocytic zone membrane.

Ensembl:

ensembl_id ENSDARG00000110266

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037749 True 951 mRNA 0.47 9 30563115 30583086

Neighbor

gene id symbol gene type direction distance location
XLOC_019029 rab38c coding upstream 2625 30549512 ~ 30560490 (+)
XLOC_019028 slc7a3a coding upstream 25704 30502002 ~ 30537411 (+)
XLOC_019027 snx12 coding upstream 74848 30470809 ~ 30488267 (+)
XLOC_019026 CR749164.1 coding upstream 201436 30355767 ~ 30361679 (+)
XLOC_019025 foxi3a coding upstream 210164 30351256 ~ 30352951 (+)
XLOC_019031 clcn5a coding downstream 79177 30662263 ~ 30696595 (+)
XLOC_019032 zgc:110224 coding downstream 138647 30721733 ~ 30742852 (+)
XLOC_019033 trpc2b coding downstream 163262 30746348 ~ 30765533 (+)
XLOC_019034 slc6a7 coding downstream 211265 30794351 ~ 30830901 (+)
XLOC_019035 rhogb coding downstream 354604 30937690 ~ 30951909 (+)
XLOC_019021 NA non-coding upstream 376794 30184309 ~ 30186321 (+)
XLOC_019020 NA non-coding upstream 379561 30163899 ~ 30183554 (+)
XLOC_019017 NA non-coding upstream 535486 30022933 ~ 30027629 (+)
XLOC_019015 CU855895.2 non-coding upstream 576219 29986796 ~ 29986896 (+)
XLOC_019014 CR847571.3 non-coding upstream 956665 29606327 ~ 29606450 (+)
XLOC_019039 NA non-coding downstream 1152103 31735189 ~ 31737398 (+)
XLOC_019040 CABZ01006935.1 non-coding downstream 1447550 32030636 ~ 32030752 (+)
XLOC_019041 NA non-coding downstream 1462338 32045424 ~ 32070143 (+)
XLOC_019042 NA non-coding downstream 1494971 32078057 ~ 32099320 (+)
XLOC_019044 NA non-coding downstream 1823677 32406763 ~ 32411647 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_01864365_01882955 NA coding CI01000006 null 1864365 ~ 1882955 (-)