XLOC_019125 (or115-15)


Basic Information

Item Value
gene id XLOC_019125
gene name or115-15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 40195452 ~ 40197014 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037890
GCTACAGCTGGATTTAGCTATCATCTTCATTCTTCATTTGACTGAAACCATCTTGGGAGAGAGGCGCTTAATAAGTAcatcctttttttttctatttactaTACATTTATTTCCCGTTTATTATGTTCTTAGGAGTTGTTTATCATCTGTGCATTAAActcatttttatttgcataatatgCTGCGTTTAACTATCCAGCTCTGAGCAAATCCTTGAGGATTTTGAAATTTGCTCACTGGCGATTGAGATTTCCTcaaggagattttttttcaaaatctctTCATAATCGACGTAAAACATTTTGAATGGAGAATTACACATTCAACAGCATCATTTTGCAGCTAGAAGGACTAAGGGTATCTGAAGAAGCCACGTATCCAGTTTTTGTATTCTTTCTGCTTTTCTATGTGGCAATTATGGTGCTTAACATTGGGATTTTTATTGTCATAACAACACATAGGAGCCTGCATGAACCCATGTACATGCTCTTCTGTAACTTGCCCATAAATGACATTCTTGGAAATTCCATCATGGTTCCTCGACTGCTTATGGACATTTTAAAATCACCATCTCAGCGCTATATCAGCTATGTTGAGTGTGTTGTTCAGGCATTCTCTACACACACGTATGGCACAACCTCCCACACCATACTAATAATCATGGCTATTGACAGATATGTGGCCATATGCAATCCACTCCGCTACCAAACTATAATGACAAACAAAACAGTGATCACACTATCGGCTTTAGCCTGGGGTATAGCACTACTGTTCATCAGCATCTTGATAGGCCTTACTTTGAGGCTGAGCCGCTGCAGAACGTTTATATCAAATCCTTTTTGTGACAATGCATCTTTGTTCAAGTTATCTTGTGAGGATGTGACTATCAATAACTTGTATGGACTGATATACACAGTGCTGCTGTTTGGCTCCTCTATGGGAAGTATTGCCGTTACATACATTAAAATAACTGCTGTTTGCTTAGTAACCAAGAGTAAAATGTTAAATAGCCGTGCACTAAAAACCTGCAGCACTCATTTGTCTCTCTATCTGATTATGCTCATCAGTGGCTTAATTATTATAGTGTTACATCGCTTTCCTGCATATTCAGATTACAGGAAAATTGCTTCCCTGCTGTTTCATATCATTCCAAGCATTTTGAATCCAATCATTTATGGCGTACAGAGCTCTGAAGTTAGACATGTTCTGATACAGGTGTTGAGCTTTAAAAAGCGTAGAGCTGTGAAagatgtttgaaaataaaacttTGAAATGGATAGCATTGTAATATGTTCTTTAAGACAGGTTCACAATTAACTGTTGATGTGCTTAAACTAACGTATCACaaacttgaaacatttttttctgtatttgtattGGGAATTGTTTAACAATATTGGATTTCATATTGCTGCTttgtattttcctgtatttttaggatcagaaaaatgaaaaaacgTTCAAAATACAGATGTGAACACAGTACCAGATTAATGTTGAAGTGCATTTTAAATATACCTTTGATCCCTTTCACTCAATAAATGTATAACTGCTACAAATGTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-189 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1).

Ensembl:

ensembl_id ENSDARG00000079294

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037890 True 1563 mRNA 0.36 1 40195452 40197014

Neighbor

gene id symbol gene type direction distance location
XLOC_019124 serpinf1 coding upstream 75283 40106448 ~ 40120169 (+)
XLOC_019123 serpinf2a coding upstream 90536 40092301 ~ 40104916 (+)
XLOC_019122 NA coding upstream 152701 40042531 ~ 40042751 (+)
XLOC_019121 NA coding upstream 164880 40030352 ~ 40030572 (+)
XLOC_019120 NA coding upstream 179084 40016148 ~ 40016368 (+)
XLOC_019126 or115-1 coding downstream 5603 40202617 ~ 40204435 (+)
XLOC_019127 NA coding downstream 18359 40215373 ~ 40217558 (+)
XLOC_019128 or115-13 coding downstream 22804 40219818 ~ 40221641 (+)
XLOC_019129 or115-12 coding downstream 28901 40225915 ~ 40227326 (+)
XLOC_019130 or115-11 coding downstream 35896 40232910 ~ 40234525 (+)
XLOC_019112 NA non-coding upstream 895429 39292120 ~ 39300023 (+)
XLOC_019108 NA non-coding upstream 1173991 39005452 ~ 39021461 (+)
XLOC_019143 NA non-coding downstream 203062 40400076 ~ 40401744 (+)
XLOC_019144 CR847523.2 non-coding downstream 203700 40400714 ~ 40400788 (+)
XLOC_019145 CR847523.1 non-coding downstream 203924 40400938 ~ 40401012 (+)
XLOC_019148 CU929119.1 non-coding downstream 326899 40523913 ~ 40527672 (+)

Expression


Co-expression Network