XLOC_019130 (or115-11)


Basic Information

Item Value
gene id XLOC_019130
gene name or115-11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 40232910 ~ 40234525 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037898
aaaaaaataattatgatgaaatatgcaaataataatatatgGTCACCATGTGTGTCTCTACCTTTTTGTTTAGGTAACAGATGGACAACCTTACCCTCAGATACAGTGTACTATTAGTGGAGGGATTGAGCGTTTCACCTCCATACAGCTATGTAGCATTTTTCAGCCTTTTAACAGTGTACATTTTCATTATGGTATCTAACCTTTGGATTTTGCTGAATATCATGATAGACAAAGATTTACACCAGCCCATGTACAGCATCTACAGCAACTTGCCACTAAGAGATGTTATAGGCACATCTGTCATTGTGCCACGATTGCTGAGGGATGTTTTAACAAATCCTTCAGAGCGCTACATCACATATGTGGAGTGTGCCCTTCAAGCTTTTTTCATACATTTGAACGGAACAGCATGCCACACTATTCTGATGATCATGGCCTTTGACAGATATGTGGCAATTTGCAATCCATTACGATACTCTGCAATAATGAGTAATAAAATGGTGATCAAACTGTCGGCAGGAGCCTGGATTTCCATGTCAGTAATGGTGGGAATTATGATCAGCTTAAGTGTGCGTCTCTCTCACTGCAGGTCTTTGATTCAGAACCACTTTTGTGACAACGCTTCACTATTTAAACTATCATGTGAAAGTACAGAGATTAATAATATATACGGATTAACTTTTACCGTTTCTGTAATAGTTGTCTCAATGGGGAGTATTTCATTAACATATCTAAGAATTGCAATCGTATGCATATCCAGCaagaacaaaagaaacaaaaaagccaTAACAACATGCAGCACTCACTTGATTGTTTACACCATCATGCTGGTCTCAGGGTTTGTTGCTGTTTTTCTCCATCGCTTCTCAGAATACTATGAAAATAGAAGAATAGCAAGTATAGTTTTCAGCGTTGTACCACCAGGGTTGAATCCCTTAATTTATGGTTTACAAGTTAAGGAAATAAGACAAAAGCTTTTCAAGTTTTGCAAATAACAAAGTTAATGCGATGTTATTTTCTGTTTGATgatatatagatatttatttaaTCTGATCTCTTTTCAATTGTAAATAGAATCGTCAGcagatctgtttttgttttttttttagcagtgctTGTGTGTACAGGATATGCATTGGTGAATTTAGGGGGAAAAGCCACTAAGAAATATGCACTAACTGGTAACTGGCTTTGTCAGTTGATAACATAACGAATAtagatataatattattttatctactataaataaaacaattaatagaaAGATTTAACTCAAATGCAAGGTTCTGTCACAAAACTGTTGGGGCCAGTTGATGTTTAGGGGCCTGATGCATCAAGAGTCATACCTACAAGACATAGTTTGTAGATTTGATTCCCTGGAGCTGACGGTAGGGAGAGTGAATGACTAGCTGTTTCATCCATCTTCAATATCCATGACTGCTGTGCCCTTAAGAAATGCATTAAACCACCAGTTGCTTCCAGGGCTGACAACAAATGATTGTCCACTGCTTTGTGTGTGTAAGCATAgtatgtgtgtctgagtgtgttcTCACAGCACACTGCTCTCTGTTCCTATTGTAATAAACGAGGATGTCAAACTCTTTGGGGTCACC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-12 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1).

Ensembl:

ensembl_id ENSDARG00000053813

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037898 True 1616 mRNA 0.37 1 40232910 40234525

Neighbor

gene id symbol gene type direction distance location
XLOC_019129 or115-12 coding upstream 5584 40225915 ~ 40227326 (+)
XLOC_019128 or115-13 coding upstream 11269 40219818 ~ 40221641 (+)
XLOC_019127 NA coding upstream 15352 40215373 ~ 40217558 (+)
XLOC_019126 or115-1 coding upstream 28475 40202617 ~ 40204435 (+)
XLOC_019125 or115-15 coding upstream 35896 40195452 ~ 40197014 (+)
XLOC_019131 or115-10 coding downstream 1380 40235905 ~ 40237971 (+)
XLOC_019132 or115-9 coding downstream 4667 40239192 ~ 40242287 (+)
XLOC_019133 or115-8 coding downstream 19904 40254429 ~ 40256146 (+)
XLOC_019134 si:ch211-218m3.11 coding downstream 26662 40261187 ~ 40263307 (+)
XLOC_019135 or115-7 coding downstream 33749 40268274 ~ 40270488 (+)
XLOC_019122 NA non-coding upstream 190159 40042531 ~ 40042751 (+)
XLOC_019121 NA non-coding upstream 202338 40030352 ~ 40030572 (+)
XLOC_019120 NA non-coding upstream 216542 40016148 ~ 40016368 (+)
XLOC_019112 NA non-coding upstream 932887 39292120 ~ 39300023 (+)
XLOC_019143 NA non-coding downstream 165551 40400076 ~ 40401744 (+)
XLOC_019144 CR847523.2 non-coding downstream 166189 40400714 ~ 40400788 (+)
XLOC_019145 CR847523.1 non-coding downstream 166413 40400938 ~ 40401012 (+)
XLOC_019148 CU929119.1 non-coding downstream 289388 40523913 ~ 40527672 (+)
XLOC_019150 CU062645.1 non-coding downstream 397803 40632328 ~ 40634988 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000042_00001652_00002941 NA coding CI01000042 null 1652 ~ 3716 (+)