XLOC_019127


Basic Information

Item Value
gene id XLOC_019127
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 40215373 ~ 40217558 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037893
AGGTCATGATAACTAAGTAAACAGATTAAATAACACTGCGCAAGGACGAGTGTCAAGTCACAGATGCACAAATCATTTAGGCACTACTCTTCAAAAAAATCATACAGgTCAAAGATGGACAACCAGACATTCCAGTACAGCAAACTATTAGTGGAGGGACTGCAAGTTACATCTCAATCAACCCTTCCTACATTTATTCTTCTTTTGATGGTTTATGCATTTATAATGGTATCTAACATTGGGATGATGGTTCTGATTTCAGCAGACAAATGTTTACATCAGCCTATGTATGTTCTTTTCTGTAACTTGACactgaatgatattttagggacAACTGACTTTGTGCCACCTGTGTTGAGGAATTTATTGATAGAGCCTTCTGAGCGCTATATCACATTTGTGGAGTGTGTTATTCAAGCTTATTTTGCTCATTTGAACGGTACAGCATCTCACACTGTGATAATGATTATGGCCTTTGACAGATATGTGGCAATATGCAATCCACTGCGATACCCGGCTATAATGACCAGTAATATGGTGGTTAAACTTTCGGTAGCAGCCTGGGCTGTTGCAGCTGTGCTGGTGGGAATATTGATCGGCCTCAGTGTGCGTCTCTCCCACTGCAGATCTGTGATTCAAGGCAGCATTTGTGACAATCCTTCATTATTTAAACTATCCTGTGAAAATACAGTGGTTAATAATGTATATGGATTAACCtttactgttgttttgtttacctCTTCAGTAGTGTGTGTTGCATTGACATACCTCAGAATAGCACTGATTtgctttaaaagtaaaaacaaagcGACAAACAGCAAAGCCATCAAAACCTGCAGCACTCACTTGACTGTTTATATAATCATGCTGATTTCTGGATCTGTTACAATATTACTTCATCGTTTTCCTGTATATGCTGAAACTAGGAAATTAGCTGCCATAATCCTTCATGTTATTCCACCAGCCTTGAATCCAATCATATATGGTGTACAATCCAAGGAAATAAGACAAAAGATTCTTAAACTATTTagaaatcaaataaatgcaaagtgattttattttatttacatgtttatggTAGAACTCTGTAATTACACTTTCTGTGATTACTAATCAGTTTATATTTATGCTGAAATTTACTATAGATAGCATTGCATAAACTGCATAAATTTATAATATTACTCCAGTAAAGTAATTAAGTTGCCACccatttatcaatgtttttttttttttgtgaaatttaaaacacacatttgtttaatttttgattGTGTATTAAAAAAGTTAAACTCTGTCACAAGATCCCTTTTCTATTAAATgcacatttacagtttttcttagtcactttggtgcgtttctcacaacactatttatatTTGCTCAACAGTTAATGcctttctcaaaacaattagtcatttgtgcacatcatagtagcagtgtctcattccttccaacaaattgcgaatgcttttggacatgcatcaattgctttcatacaagtttctgctgtttataacattataattcgcttatgtcatgtcagtcaaaattaactaaacttgtaaatgctgaatagtcatcccatataaaactaatagtccttatTTCagtacttgagtcattacatccacaaatgttgaactagttgtcaaaatctgtcacgcaaaaaattataaacattaaaaaaataaataaataaatcctgaaaatgtcttctaaattgaacaatttcatgaatgatttacagacctgtgtatgctGTAGGTTCAGTTttaatatgtactgcaatattgtttacagttgtgcacagctcgactcaaaggaagtttatgtttgttgtaaagaaGTGTATATTTAtccttttgcacaatgctgtgaataaattataattgcaaagagcaaatgcagtaaaaatgtgaaacatatcagtgtcttgtactcggaTACCTcaataaatgcagtgatgtct
>TCONS_00037894
ACTGCGCAAGGACGAGTGTCAAGTCACAGATGCACAAATCATTTAGGCACTACTCTTCAAAAAAATCATACAGGTATTGtaaattttaaatgtgatttaatttTACGTGCTCACATTTAGGTTCTTTTTCATGTATAAAATTACTTGAGAAAACTTGGCAGCACTTTCAAACGCATAGTAAAATTCAttgtaatgacaaaaaaaatgaaaagaacaagGTGAAATATGGTAGATTTATACATGTGTACACATTATTGAGAACTGCcactttatttgtgtgttttgtttaggTCAAAGATGGACAACCAGACATTCCAGTACAGCAAACTATTAGTGGAGGGACTGCAAGTTACATCTCAATCAACCCTTCCTACATTTATTCTTCTTTTGATGGTTTATGCATTTATAATGGTATCTAACATTGGGATGATGGTTCTGATTTCAGCAGACAAATGTTTACATCAGCCTATGTATGTTCTTTTCTGTAACTTGACactgaatgatattttagggacAACTGACTTTGTGCCACCTGTGTTGAGGAATTTATTGATAGAGCCTTCTGAGCGCTATATCACATTTGTGGAGTGTGTTATTCAAGCTTATTTTGCTCATTTGAACGGTACAGCATCTCACACTGTGATAATGATTATGGCCTTTGACAGATATGTGGCAATATGCAATCCACTGCGATACCCGGCTATAATGACCAGTAATATGGTGGTTAAACTTTCGGTAGCAGCCTGGGCTGTTGCAGCTGTGCTGGTGGGAATATTGATCGGCCTCAGTGTGCGTCTCTCCCACTGCAGATCTGTGATTCAAGGCAGCATTTGTGACAATCCTTCATTATTTAAACTATCCTGTGAAAATACAGTGGTTAATAATGTATATGGATTAACCtttactgttgttttgtttacctCTTCAGTAGTGTGTGTTGCATTGACATACCTCAGAATAGCACTGATTtgctttaaaagtaaaaacaaagcGACAAACAGCAAAGCCATCAAAACCTGCAGCACTCACTTGACTGTTTATATAATCATGCTGATTTCTGGATCTGTTACAATATTACTTCATCGTTTTCCTGTATATGCTGAAACTAGGAAATTAGCTGCCATAATCCTTCATGTTATTCCACCAGCCTTGAATCCAATCATATATGGTGTACAATCCAAGGAAATAAGACAAAAGATTCTTAAACTATTTagaaatcaaataaatgcaaagtgattttattttatttacatgtttatggTAGAACTCTGTAATTACACTTTCTGTGATTACTAATCAGTTTATATTTATGCTGAAATTTACTATAGATAGCATTGCATAAACTGCATAAATTTATAATATTACTCCAGTAAAGTAATTAAGTTGCCACccatttatcaatgtttttttttttttgtgaaatttaaaacacacatttgtttaatttttgattGTGTATTAAAAAAGTTAAACTCTGTCACAAGATCCCTTTTCTATTAAATgcacatttacagtttttcttagtcactttggtgcgtttctcacaacactatttatatTTGCTCAACAGTTAATGcctttctcaaaacaattagtcatttgtgcacatcatagtagcagtgtctcattccttccaacaaattgcgaatgcttttggacatgc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-010309-1 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1).

Ensembl:

ensembl_id ENSDARG00000094235

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037893 False 1969 lncRNA 0.34 2 40215373 40217558
TCONS_00037894 True 1663 mRNA 0.34 1 40215407 40217069

Neighbor

gene id symbol gene type direction distance location
XLOC_019126 or115-1 coding upstream 10938 40202617 ~ 40204435 (+)
XLOC_019125 or115-15 coding upstream 18359 40195452 ~ 40197014 (+)
XLOC_019124 serpinf1 coding upstream 95204 40106448 ~ 40120169 (+)
XLOC_019123 serpinf2a coding upstream 110457 40092301 ~ 40104916 (+)
XLOC_019122 NA coding upstream 172622 40042531 ~ 40042751 (+)
XLOC_019128 or115-13 coding downstream 2260 40219818 ~ 40221641 (+)
XLOC_019129 or115-12 coding downstream 8357 40225915 ~ 40227326 (+)
XLOC_019130 or115-11 coding downstream 15352 40232910 ~ 40234525 (+)
XLOC_019131 or115-10 coding downstream 18347 40235905 ~ 40237971 (+)
XLOC_019132 or115-9 coding downstream 21634 40239192 ~ 40242287 (+)
XLOC_019121 NA non-coding upstream 184801 40030352 ~ 40030572 (+)
XLOC_019120 NA non-coding upstream 199005 40016148 ~ 40016368 (+)
XLOC_019112 NA non-coding upstream 915350 39292120 ~ 39300023 (+)
XLOC_019108 NA non-coding upstream 1193912 39005452 ~ 39021461 (+)
XLOC_019143 NA non-coding downstream 182518 40400076 ~ 40401744 (+)
XLOC_019144 CR847523.2 non-coding downstream 183156 40400714 ~ 40400788 (+)
XLOC_019145 CR847523.1 non-coding downstream 183380 40400938 ~ 40401012 (+)
XLOC_019148 CU929119.1 non-coding downstream 306355 40523913 ~ 40527672 (+)
XLOC_019150 CU062645.1 non-coding downstream 414770 40632328 ~ 40634988 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000041_00988792_00989730 OR115-13 coding CI01000041 null 988647 ~ 989811 (+)