XLOC_019459 (noc4l)


Basic Information

Item Value
gene id XLOC_019459
gene name noc4l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 14817273 ~ 14826066 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038366
CTTTTGACATGAACGCGCACCAGAAACACGTGAAACCATCATGGCGCCGTCCGGGGACAGCAACGTGAAAGAACATAACAACCAGGTTTCATATAAGAAAGCTATAAATACTAAAACAGATCTTATACTTCAAAACAGAAAACATGCCAACGATATATTCGACGTTATTGAATATTTGCAGTCCgaaaaggaaaaagaaatcaTTTTCGCCACCAACGCGTGCAGTAAGATCTTCTGTGAGCTGATAGAGAGAGGAGATCTGTTTGTTGGTGAACTGCCCAAAGAAGAAGATCTCGCGCAAGGTGATCGCAGTGCTGAAGAGAAATATCATATATTTATGAGACACCGTTACAACAGCTGTGTGGAACTAATGCTGGAAAATATAAGCCATGAATCTTTCCAAGTCAAGGAGACATCGCTCTGTGCAGTGATGAAATTTGTTGCGACAGAAGGCAAACACCCCCTCCAGAATCTGGACTGGAGTGAACACTACAACTTTCCCAGGGAGCTCATACAGGCCCTGGTGGAGCATCTTCTGTCAGAGAAAGAAGACATGTCACTGCTCATCTCCAGGTTTCAGGAGTTCATGGAGAAGGATGACGTGCGCTACTACGTCATGAGTTCAGTGCGATACAGCACAGCCACTGTCATGGAGAGAAACAAAAAGGCTGTGATTCCTGTATTTCAGAATAATGTGTTCAATCTCCTCACAACCATCAACATTCCCAACCAAGCATCAGAAATGACTAATTTCCTTGTTCAACAGCAAaGCAAACATGACGACTGGAAAGCAGCCAAATTAAAGGAGCATAAAAGAGCATTTGAGCAAATGTGGCTGCTGTTTCTCAAGTACAAGTTGCCTGGCAGCATGTACAAGAAGATCCTGGTCATCCTTCATGAATCAATACTGCCACAGATGAGTGATCCCAAGCTGATGATGGACTTCCTGAGCGCTGCCTACGACATTGGTGGAGCAATCAGTTTGTTGGCTCTGAATGGCTTGTTCGTCCTCATCCATGAGCATAATTTGGATTACCCAGATTTTTATAAGAAGCTCTACAATCTGCTGGATCCTTCTATCTTCCATGTCAAGTACAGAGCACGGTTTTTCCACCTGGCAAATATTTTCCTGTCTTCAACGCATCTGCCAGTGTATCTTGTGGCAGCGTTTGTGAAGCGTCTTGCTCGTCTGTCTCTCACAGCGCCACCTACAGCTCTTCTTATTCTGCTGCCGTTCATCTGTAATCTAATTCGCAGACACCCCTCGTGTAGAGTCCTCATTCACAGACCCAGTGCTGCTGACGAGCCTTGTGATGACCCGTATGTGATGGAGGAGGAAGATCCAGCTCAATGTCATGCTCTGGAAAGCAGCCTATGGGAGATCAAGACCTTGCAGAATCATTACCATCCAGATGTGTCCAAAGCCGCCACGATGATCAATGAACCACTTTCTGCACAAGAGGAGGACATCAGTGAACTGCTGGAGCTAACAACGTTTGAGCTAATGGAGCGAGAACTGAAGGGTGAAAAGAAGACTGTTCCGCTGGAGTTTGACATGGCCACGGATCTCCTAAAGAGCTCCAGAGAGGTGCTCGGAGTACACTTTACTCTAGAGTAACACCCCTATTTACTCTCTCATATAGTCCTGTTTTTTTgccaaatgttttcttttataataAAGTATGTGTGTGTCCACTCTAA

Function

symbol description
noc4l Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nuclear membrane. Predicted to be integral component of membrane. Predicted to be part of Noc4p-Nop14p complex and small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and segmental plate. Orthologous to human NOC4L (nucleolar complex associated 4 homolog).

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0032040 small-subunit processome cellular_component
GO:0030692 Noc4p-Nop14p complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-98 Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nuclear membrane. Predicted to be integral component of membrane. Predicted to be part of Noc4p-Nop14p complex and small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and segmental plate. Orthologous to human NOC4L (nucleolar complex associated 4 homolog).

Ensembl:

ensembl_id ENSDARG00000045565

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038366 True 1701 mRNA 0.45 15 14817273 14826066

Neighbor

gene id symbol gene type direction distance location
XLOC_019458 phpt1 coding downstream 1299 14806342 ~ 14815974 (-)
XLOC_019457 si:dkey-11o18.5 coding downstream 13719 14784321 ~ 14803554 (-)
XLOC_019456 glulc coding downstream 41549 14768411 ~ 14775724 (-)
XLOC_019455 NA coding downstream 50717 14766080 ~ 14766556 (-)
XLOC_019454 NA coding downstream 51325 14764193 ~ 14765948 (-)
XLOC_019460 pus1 coding upstream 517 14826583 ~ 14832369 (-)
XLOC_019461 ulk1b coding upstream 13523 14839589 ~ 14878220 (-)
XLOC_019462 mmp17a coding upstream 65984 14892050 ~ 15046065 (-)
XLOC_019463 sfswap coding upstream 299431 15125497 ~ 15282452 (-)
XLOC_019464 NA coding upstream 473888 15299954 ~ 15318397 (-)
XLOC_019446 BX470221.1 non-coding downstream 948495 13868662 ~ 13868778 (-)
XLOC_019439 NA non-coding downstream 1529504 13284400 ~ 13287769 (-)
XLOC_019434 CR792457.1 non-coding downstream 1755499 13055886 ~ 13061774 (-)
XLOC_019465 NA non-coding upstream 648390 15474456 ~ 15572656 (-)
XLOC_019467 NA non-coding upstream 991284 15817350 ~ 15819871 (-)
XLOC_019468 NA non-coding upstream 1013512 15839578 ~ 15845578 (-)
XLOC_019473 NA non-coding upstream 1328514 16154580 ~ 16169064 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_10775003_10781543 NA coding CI01000006 null 10775003 ~ 10781657 (+)