XLOC_019458 (phpt1)


Basic Information

Item Value
gene id XLOC_019458
gene name phpt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 14806342 ~ 14815974 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038363
CAGGACTAAAGACGAATCTGGCACTCGTCTGGGGGTTAAAATGTAAAGTCCAGGTATTATCTACTTGTGAAATCAGGAAGGAGGGACGCAGTTGAAGTTAATAACCTCATATATGTCAGAACTGGGCTTTTGTGCGCTGTACGCAGAGGAAGAGATTGTATTGTGATGTAAAAAATGAAGACAGGATTCATGGCTGCCTGCTTCTGGATTCTTGTGTGTGTCCTGCTGAATGTCTGTCAGAGGGCTGTGGCTCTGGATGGAAAGGATTGCAGCAGTTCTCCAGAAAACAGATGTGACTTCATTTGTGACTGCAAAGACTGCAGTGATGAGCAAGACTGTGGTTATCTTGGGCCAAAGTttgtgtgtgattttgagcatgaggGCAAATGTGGATGGACTGCAAAGCCAGCTGAAGGTGCGTACATGTGGCAGAGACAGAGGAGAGGAAAAACACTGCCGGACAGCGGCCCGTCCTCAGACTACACCACTGGAACCTCAACAGGCTGGTTTATGGCAGTGACGGCAGTGACTTCAGATGCACCCCAAACTGCAATTCTTGAGTCACCTACAATAAAACACTCCTCTC
>TCONS_00038364
TCTTCTGGCGCTGGATTGAACTTCGCTGTTGTGTTTGGGGTTTTTTTACGGTCGCTTTTGCAATAATGTCAGCGGAACGTCTCGCTAAAATTCCAGAGGTGGATTTAGACCCCAACGGCGTCTTTAAATACGTCCTCATTCGCGTTCATAGCAAAGACGACGATTCATATGTTGATATAGTGAGAGGATACGCGTGGGCCGAATATCACGCTGACATATATGACCGTGTGTCTGGAGAGCTGGAGAGAGCTGGAGGAGTGGACTGTGAGTGTCTCGGAGGAGGAAGAATCAAACATGACCAGGACGCAAAGAAGATCCACGTCTACGGTTATTCCATGggatTTGGCAGAGCGAAGCATTCAGTTTCCACAGAGAAGATAAAAACTCATTACCCAGATTATGAGCTGTGGCTCTGGATGGAAAGGATTGCAGCAGTTCTCCAGAAAACAGATGTGACTTCATTTGTGACTGCAAAGACTGCAGTGATGAGCAAGACTGTGGT
>TCONS_00038365
AACACGGTAAATGAAGCTCTTTTCTTCTGGCGCTGGATTGAACTTCGCTGTTGTGTTTGGGGTTTTTTTACGGTCGCTTTTGCAATAATGTCAGCGGAACGTCTCGCTAAAATTCCAGAGGTGGATTTAGACCCCAACGGCGTCTTTAAATACGTCCTCATTCGCGTTCATAGCAAAGACGACGATTCATATGTTGATATAGTGAGAGGATACGCGTGGGCCGAATATCACGCTGACATATATGACCGTGTGTCTGGAGAGCTGGAGAGAGCTGGAGGAGTGGACTGTGAGTGTCTCGGAGGAGGAAGAATCAAACATGACCAGGACGCAAAGAAGATCCACGTCTACGGTTATTCCATGggatTTGGCAGAGCGAAGCATTCAGTTTCCACAGAGAAGATAAAAACTCATTACCCAGATTATGAGGTGACCTGGGCAGATGAAGGGTATTGAGTGGGTTTACATGGGATACGCTTGACGACCCAATATGAGAACACAGTGAACTGTTAAAATTAGCTTTGAACTGTTGCATTGGACTTGCATTGGCCAAGACTGAGAGAAAACAGAACTGTTTCAGATATGGTTGGATGGATAAAATGTTTGCCTTAACTAGAGGAGAGGTCATcctcattttgtttggtttttaactTAATGTGTAGCTTAACACATGACAATGAAAAGAGAAAAATGCACTTCTGTTCATCCATTGGTCTTTTTGAATGACAAAATATAAGAAAAGGGGGAAATAAAGGATACTGCAGAAGCTTAAGGTCTTAAATACAAAAAAGCAATGACATCCTAAAAAACTTCCAGATGCCCAAATGTTTCCACACAGTTATGTAATTGGAGATTTAAAGTTTTGAAACGATTGATTCCAAATGATTTACTCATTTGAAGCGTTTGAAACATCAATGTCTAGCGACATCTCCTGGACAAAACCAAGTAATTGAAACACAAAACTCAAAACAAACATGGATTAAGTTTGCCTTTTTCAAACGCAGTTAAATTGAAGTTAAAACCTATCAGATGTACTTGGTTTATCATCctatatcattaaatattaagtGTTTACAAAATAA

Function

symbol description
phpt1 Predicted to enable protein histidine phosphatase activity. Predicted to be involved in peptidyl-histidine dephosphorylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human PHPT1 (phosphohistidine phosphatase 1).

GO:

id name namespace
GO:0035971 peptidyl-histidine dephosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0101006 protein histidine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-85 Predicted to enable protein histidine phosphatase activity. Predicted to be involved in peptidyl-histidine dephosphorylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human PHPT1 (phosphohistidine phosphatase 1).

Ensembl:

ensembl_id ENSDARG00000045567

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038363 False 586 mRNA 0.47 4 14806342 14811058
TCONS_00038364 False 502 mRNA 0.47 4 14807435 14815952
TCONS_00038365 True 1079 mRNA 0.39 3 14812838 14815974

Neighbor

gene id symbol gene type direction distance location
XLOC_019457 si:dkey-11o18.5 coding downstream 2788 14784321 ~ 14803554 (-)
XLOC_019456 glulc coding downstream 30618 14768411 ~ 14775724 (-)
XLOC_019455 NA coding downstream 39786 14766080 ~ 14766556 (-)
XLOC_019454 NA coding downstream 40394 14764193 ~ 14765948 (-)
XLOC_019453 arrdc1b coding downstream 43398 14699693 ~ 14762944 (-)
XLOC_019459 noc4l coding upstream 1299 14817273 ~ 14826066 (-)
XLOC_019460 pus1 coding upstream 10609 14826583 ~ 14832369 (-)
XLOC_019461 ulk1b coding upstream 23615 14839589 ~ 14878220 (-)
XLOC_019462 mmp17a coding upstream 76076 14892050 ~ 15046065 (-)
XLOC_019463 sfswap coding upstream 309523 15125497 ~ 15282452 (-)
XLOC_019446 BX470221.1 non-coding downstream 937564 13868662 ~ 13868778 (-)
XLOC_019439 NA non-coding downstream 1518573 13284400 ~ 13287769 (-)
XLOC_019434 CR792457.1 non-coding downstream 1744568 13055886 ~ 13061774 (-)
XLOC_019464 NA non-coding upstream 483980 15299954 ~ 15318397 (-)
XLOC_019465 NA non-coding upstream 658482 15474456 ~ 15572656 (-)
XLOC_019467 NA non-coding upstream 1001376 15817350 ~ 15819871 (-)
XLOC_019468 NA non-coding upstream 1023604 15839578 ~ 15845578 (-)
XLOC_019473 NA non-coding upstream 1338606 16154580 ~ 16169064 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_10783751_10785116 PHPT1 coding CI01000006 null 10783751 ~ 10785389 (+)