RNA id: TCONS_00038365


Basic Information

Item Value
RNA id TCONS_00038365
length 1079
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_019458
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 14806342 ~ 14815974 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACGGTAAATGAAGCTCTTTTCTTCTGGCGCTGGATTGAACTTCGCTGTTGTGTTTGGGGTTTTTTTACGGTCGCTTTTGCAATAATGTCAGCGGAACGTCTCGCTAAAATTCCAGAGGTGGATTTAGACCCCAACGGCGTCTTTAAATACGTCCTCATTCGCGTTCATAGCAAAGACGACGATTCATATGTTGATATAGTGAGAGGATACGCGTGGGCCGAATATCACGCTGACATATATGACCGTGTGTCTGGAGAGCTGGAGAGAGCTGGAGGAGTGGACTGTGAGTGTCTCGGAGGAGGAAGAATCAAACATGACCAGGACGCAAAGAAGATCCACGTCTACGGTTATTCCATGggatTTGGCAGAGCGAAGCATTCAGTTTCCACAGAGAAGATAAAAACTCATTACCCAGATTATGAGGTGACCTGGGCAGATGAAGGGTATTGAGTGGGTTTACATGGGATACGCTTGACGACCCAATATGAGAACACAGTGAACTGTTAAAATTAGCTTTGAACTGTTGCATTGGACTTGCATTGGCCAAGACTGAGAGAAAACAGAACTGTTTCAGATATGGTTGGATGGATAAAATGTTTGCCTTAACTAGAGGAGAGGTCATcctcattttgtttggtttttaactTAATGTGTAGCTTAACACATGACAATGAAAAGAGAAAAATGCACTTCTGTTCATCCATTGGTCTTTTTGAATGACAAAATATAAGAAAAGGGGGAAATAAAGGATACTGCAGAAGCTTAAGGTCTTAAATACAAAAAAGCAATGACATCCTAAAAAACTTCCAGATGCCCAAATGTTTCCACACAGTTATGTAATTGGAGATTTAAAGTTTTGAAACGATTGATTCCAAATGATTTACTCATTTGAAGCGTTTGAAACATCAATGTCTAGCGACATCTCCTGGACAAAACCAAGTAATTGAAACACAAAACTCAAAACAAACATGGATTAAGTTTGCCTTTTTCAAACGCAGTTAAATTGAAGTTAAAACCTATCAGATGTACTTGGTTTATCATCctatatcattaaatattaagtGTTTACAAAATAA

Function

GO:

id name namespace
GO:0035971 peptidyl-histidine dephosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0101006 protein histidine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-85 Predicted to enable protein histidine phosphatase activity. Predicted to be involved in peptidyl-histidine dephosphorylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human PHPT1 (phosphohistidine phosphatase 1).

Ensembl:

ensembl_id ENSDART00000067004

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039597 lncRNA downstream 17847 14785322 ~ 14794991 (-) False XLOC_019457
TCONS_00039596 lncRNA downstream 18266 14784952 ~ 14794572 (-) False XLOC_019457
TCONS_00039236 lncRNA downstream 46282 14766080 ~ 14766556 (-) True XLOC_019455
TCONS_00039235 lncRNA downstream 46890 14764193 ~ 14765948 (-) True XLOC_019454
TCONS_00038357 lncRNA downstream 155061 14656593 ~ 14657777 (-) True XLOC_019452
TCONS_00038370 lncRNA upstream 41484 14857458 ~ 14860466 (-) False XLOC_019461
TCONS_00038371 lncRNA upstream 48196 14864170 ~ 14877659 (-) True XLOC_019461
TCONS_00039598 lncRNA upstream 483980 15299954 ~ 15318397 (-) True XLOC_019464
TCONS_00039599 lncRNA upstream 658482 15474456 ~ 15572656 (-) True XLOC_019465
TCONS_00039600 lncRNA upstream 1001376 15817350 ~ 15819871 (-) True XLOC_019467
TCONS_00038363 mRNA downstream 1780 14806342 ~ 14811058 (-) False XLOC_019458
TCONS_00038361 mRNA downstream 9284 14784321 ~ 14803554 (-) False XLOC_019457
TCONS_00038362 mRNA downstream 9472 14785322 ~ 14803366 (-) True XLOC_019457
TCONS_00038359 mRNA downstream 37114 14768411 ~ 14775724 (-) False XLOC_019456
TCONS_00038360 mRNA downstream 39146 14768590 ~ 14773692 (-) True XLOC_019456
TCONS_00038366 mRNA upstream 1299 14817273 ~ 14826066 (-) True XLOC_019459
TCONS_00038367 mRNA upstream 10609 14826583 ~ 14832369 (-) False XLOC_019460
TCONS_00038368 mRNA upstream 12520 14828494 ~ 14830353 (-) True XLOC_019460
TCONS_00038369 mRNA upstream 23615 14839589 ~ 14878220 (-) False XLOC_019461
TCONS_00038372 mRNA upstream 76076 14892050 ~ 14966718 (-) False XLOC_019462
TCONS_00038355 other downstream 149606 14645247 ~ 14663232 (-) False XLOC_019452
TCONS_00038344 other downstream 944060 13868662 ~ 13868778 (-) True XLOC_019446
TCONS_00038337 other downstream 1150644 13651826 ~ 13662194 (-) False XLOC_019441
TCONS_00038335 other downstream 1155766 13648627 ~ 13657072 (-) False XLOC_019441
TCONS_00038328 other downstream 1587436 13217908 ~ 13225402 (-) False XLOC_019438
TCONS_00038394 other upstream 2305387 17121361 ~ 17121477 (-) True XLOC_019481
TCONS_00038404 other upstream 2992873 17808847 ~ 17808962 (-) True XLOC_019491
TCONS_00038411 other upstream 3450345 18266319 ~ 18272269 (-) False XLOC_019496
TCONS_00038418 other upstream 3842141 18658115 ~ 18658230 (-) True XLOC_019499
TCONS_00038423 other upstream 4126735 18942709 ~ 18946525 (-) True XLOC_019501

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_10783751_10785116.mRNA True 665 mRNA 0.42 3 CI01000006 10783751 ~ 10785389 (+)