RNA id: TCONS_00038370


Basic Information

Item Value
RNA id TCONS_00038370
length 502
lncRNA type retained_intron
GC content 0.51
exon number 4
gene id XLOC_019461
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 14839589 ~ 14878220 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtctacgtaTCTCCACAGCTACACCAGTGACCGTGACATGCTTTCCCAATTCAGCCTCTGCAAGCTCATGCAGCAGTTCATCTACTTCACACCTGGCCTCTCCTCCTcaATCGCTTGCTGAGATCCAGCATGTCCGTGCAAAGGCGTTAGCCTCCCCTACCCAGGATTCTCCAGGATATCTGCTGAAAGACtcaggaggaggtggaggaggcaGCAGTAGCAAAAACTCATCCTGTGACACTGATGATTTCGTCATGGTTCCAGCTCATTTCCCCAGTGAGCTTACCTGTGACATGCCAACTGGAAAGGTTCTCCAGGACAGTTTGATGTATAGCGGGAGTTCTCTTCTGGCGTCCGGAGGTCAGTGCAGTCAAGGAAAGACTCCGCCACGCTCTCCATCATTCAGCAGCTCTCCAGGACCCAGCGGGTATGATCTgccctttaaaacaaaaaagaaagaaataaactaCCAAAATGGCt

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0048675 axon extension biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071203-2 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including autophagy of nucleus; generation of neurons; and macroautophagy. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in phagophore assembly site membrane. Is expressed in liver. Orthologous to human ULK1 (unc-51 like autophagy activating kinase 1).

Ensembl:

ensembl_id ENSDART00000132276

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039597 lncRNA downstream 62467 14785322 ~ 14794991 (-) False XLOC_019457
TCONS_00039596 lncRNA downstream 62886 14784952 ~ 14794572 (-) False XLOC_019457
TCONS_00039236 lncRNA downstream 90902 14766080 ~ 14766556 (-) True XLOC_019455
TCONS_00039235 lncRNA downstream 91510 14764193 ~ 14765948 (-) True XLOC_019454
TCONS_00038356 lncRNA downstream 194856 14645247 ~ 14662602 (-) False XLOC_019452
TCONS_00038371 lncRNA upstream 3704 14864170 ~ 14877659 (-) True XLOC_019461
TCONS_00039598 lncRNA upstream 439488 15299954 ~ 15318397 (-) True XLOC_019464
TCONS_00039599 lncRNA upstream 613990 15474456 ~ 15572656 (-) True XLOC_019465
TCONS_00039600 lncRNA upstream 956884 15817350 ~ 15819871 (-) True XLOC_019467
TCONS_00039601 lncRNA upstream 979112 15839578 ~ 15845578 (-) False XLOC_019468
TCONS_00038367 mRNA downstream 25089 14826583 ~ 14832369 (-) False XLOC_019460
TCONS_00038368 mRNA downstream 27105 14828494 ~ 14830353 (-) True XLOC_019460
TCONS_00038366 mRNA downstream 31392 14817273 ~ 14826066 (-) True XLOC_019459
TCONS_00038365 mRNA downstream 41484 14812838 ~ 14815974 (-) True XLOC_019458
TCONS_00038364 mRNA downstream 41506 14807435 ~ 14815952 (-) False XLOC_019458
TCONS_00038372 mRNA upstream 31584 14892050 ~ 14966718 (-) False XLOC_019462
TCONS_00038373 mRNA upstream 31584 14892050 ~ 15046065 (-) True XLOC_019462
TCONS_00038374 mRNA upstream 265031 15125497 ~ 15282452 (-) False XLOC_019463
TCONS_00038375 mRNA upstream 265279 15125745 ~ 15200556 (-) True XLOC_019463
TCONS_00038376 mRNA upstream 776074 15636540 ~ 15674802 (-) True XLOC_019466
TCONS_00038355 other downstream 194226 14645247 ~ 14663232 (-) False XLOC_019452
TCONS_00038344 other downstream 988680 13868662 ~ 13868778 (-) True XLOC_019446
TCONS_00038337 other downstream 1195264 13651826 ~ 13662194 (-) False XLOC_019441
TCONS_00038335 other downstream 1200386 13648627 ~ 13657072 (-) False XLOC_019441
TCONS_00038328 other downstream 1632056 13217908 ~ 13225402 (-) False XLOC_019438
TCONS_00038394 other upstream 2260895 17121361 ~ 17121477 (-) True XLOC_019481
TCONS_00038404 other upstream 2948381 17808847 ~ 17808962 (-) True XLOC_019491
TCONS_00038411 other upstream 3405853 18266319 ~ 18272269 (-) False XLOC_019496
TCONS_00038418 other upstream 3797649 18658115 ~ 18658230 (-) True XLOC_019499
TCONS_00038423 other upstream 4082243 18942709 ~ 18946525 (-) True XLOC_019501

Expression Profile

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