LOC110522810 (LOC106573296)


Basic Information

Item Value
gene id LOC110522810
gene name LOC106573296
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 41188896 ~ 41218768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601283.2
acccctccccccaccaccacctcccctcaccaccaacaccacccctCTCTCGGCAGAGCCCAGAGCCTCACCATCTCCTGCCACGGATAGGCAGTGGTCACGGAGACACGGAGCTAGACAAGAGGAAACCTACTGAGGAGGGGGAGACGTGCACAGAGCCATTTTCTTGGAGGAGCCAGTGTGCCGTTGATGGGAAGAGGATGCATTGTGGGCTGCTGGAGGAGCCTGATATGGATTCCACAGAGAGCTGGATTGAAAGATGCCTCAACGAGAACGAGAGCAAGCGGTGTTCCAGCCACACGTCCCTGGGGAATACGTCCAATGACGAAAATGAGGAGAAAGAAAACAACAGGGCATCTAAACCACATTCAACACCAGCTACCCTACAATGGCTGGAGGAGAACTATGAGATTGCAGAAGGGGTTTGTATCCCCCGCAGTGCTCTCTACATGCACTACCTGGACTTCTGTGAGAAGCACGACACACAGCCTGTCAACGCCGCCAGCTTTGGGAAGATTATTAGACAACAGTTTCCACAACTAACCACAAGAAGACTGGGGACCAGGGGACAGTCAAAGTACCACTATTATGGCATCGCTGTGAAGGAGAGTTCCCAGTACTACGATGTGATGTATTCCAAGAAGGGGGCGGCGTGGGTGAACGAGACTGGCAAGAAGGAGGTCACCAAGCAAACAGTGGCGTATTCACCACGCTCCAAACTGGGGACGCTCCTGCCAGACTTTCCAAATGTCAAAGACCTAAATCTGCCCGCCAGTCTGTCAGAAGAGAAGGTGTCAACGTTCATCATGATGTACAGAACTCACTGCCAGAGGATACTGGATACAGTAATACGCGCAAACTTTGACGAGGTCCAGAGCTTCCTGCTGCACTTTTGGCAGGGCATGCCCCCGCACATGCTCCCTGTCCTGGGCTCCTCCACTGTGGTCAACATTGTGGGCGTCTGTGACTCCATCCTCTATAAGGCAATCTCTGGGGTTCTCATGCCCACAGTCCTTCAAGCACTGCCTGATAGTTTGACCCAGGTTATCCGGAAGTTTGCCAAACAACTGGATGAGTGGCTTAAAGTAGCACTTCACGACCTGCCTGAAAACCTGAGGAATATCAAGTTCGAATTATCTAGAAGATTTTCTCAGGTTCTCAAGCGGCAGACATCTTTGAACCATCTATGTCAGGCGTCGCGGACGGTGATCCACAGTGCAGACATCACCTTTCAGATGATGGAGGACTGGAGGAACGTGGACCTGAACAGCATCACCAAGCAGACACTTTACACCATGGAGGACACACGGGAGGAGCAACGGCGGCTCATCATCCACTtGTACCAGGAGTTTGACCGTCTTTTGGAGGAGCAGTCTCCTATAGAGGGCTACATAGAGTGGCTGGACTCCATGGTGGACCGCTGTGTTGTCAAGGTGGCAGGGAAGAGGCCTGGGTGCCTGAAGAAGGTGGCCCAGCAGTTCCTGCTTATGTGGTCGTGCTTCGGGACACGAGTCATCCGGGATATGACCCTCCACAGTGCGCCGAGCTTTGGCTCGTTCCACCTGATCCACCTGATGTTTGATGACTATGTGCTGTACCTACTGGAGTCCCTGCACTGCCAGGAGAGGGCTAACGAGCTCATGAGGTCCATGAAGGCAGAGGGCAACACAGCTGAGCAAGAGGAAGAGATGATGCTGACGGAGACCACGCCCACATCCACGTCCCCAGGGCCTTTCTCCCCGGCCAAGTCTGTCACCTCAGTGGGGGTCCCAGCCGCCAGCTCCCCCGCTGCTGCCCAGTCCCCAGAGTACACAGGGGCCACAGCCACcacagGAGCTGTTCAGTCATATACCTGGTCCCTTACGTACACAGTGACAACGTCAAGCGGCACCCCTTCTGAGGGCGGACAGCAGCAGCCTTGCATGCGCAGTGGTGCCCCAGTGCCCCCTCCCTCCTCCGCCCATCGACTGCCAGTCTACGCACACCGGGATGAGCACGGGTTCACTGGGAGCTATAACTACGGAAGCTACTCCAACCAGCACCCCCACTCCATCCAGAGCCAGTACCCCAGTCTGGCCCATGAACCGGGCATTCCTGCCCCCCTCCATTATCCCGCCTACCACCGCACTTCTGCACAGTACCCACTCAACAGCCAGATGTCACGGATGGAGCCCTGCTTGATGGGAGGTACTCCTCGGCTGCACCCTACGCCTGTGACCCCCCGGTGGGCTGATGTCTCACCGGCCAACAGCTGTTACACCAGTCCCCCTATACACTCCTCCCGCTACGCCGCCTCTGGAGACATGTACTCCCCCCTGGCCCCTCGCAGGAACTCTGAGTATGAACACTCTCAACACTTTCCCGGTTTCGCCTACATCAACGGAGAGGCCACTACAGGCTGGGCCAAGTAGGCTTTCAATTCAGCCCTCAGAGAGAGGAGCTCCCCTGGGCACAGTCATCCCCATGCAGCCTGCCTGCCAAGCCTATGGATGCAAACGTCCCACTGCCTTTCCCCAACACGACCCAGAGGCACCTAATCAGGAGTATCAGTGTAATGGTAGGGGAGAGAGGCTGCAGAGTAGCAACACTGGGTTACCTGAGCCACAGGCCACAGCACAGAGAACCAAGCTAAGATTCAGGACTTCTTCTCACATTACACAATCAGAATATTGTGGTGTAGGCCTAGTCTGTTCAGGGCAGCAATCATCTCAATGGTGGAGCTGTTTGCAGAAAATGGCAGTGCAAACGGAGGCAGTCGGAATAATCTCACATATGGAAGTGTGCAGTGTGGCCTACACAGCTGTGCCTTTGCAGTCGATGAACACCCATCCCTGCAGTCGAccaacagatgtaggatcttagttTTATCACCCTGTTGTTGAGGAAATATCCTGCACAGTAGTAAATGCAAATTTGTATTGTATTAAaaggttttaaaaggcttctagaATTTGTCATTTCCACTTCAAAATGATTTGCCTTAACAAAAAATGTTTCAAACCCTACAAAAATGCTGGAGGATTATTTTTCTGCAGTGAGAAAtgtatcaaattaagatcctacatctgtaccaagtcaaaaaaacactcatcacccctccctccctgtactcAGCCACTAATGTACGCAACCAATGTAACTCTGTTAACGTTGTCCACTGTGGCTGACGTCAGTATGGCCTCTTAACGACGTACGCTGTTTTCACTTGGTCAGCACCACCGCATTGCCTGTGTGGGCTCAGAGCAGGCCTCTCAGATGCTGTACAGAAGACAAGCTTCAGCCTGATGCAGaaccagggtcgtattcattacgGCACAACAGAGCAATacattttgcaacggaaaatTAATATAGTATTTCTTATTGGGTTCAGGTTGTCATTCCctatttcagtctgttttcttcagtttggtggctaatgaatacaacccaggaTGGATTGCCTTATTGTTTCACCGCTGGAGTGCTGTGCCTCAGCCAGATTATTTGTGTGCTTTGTCACAAGCTCTGTTGCTGTAtttgtgagaggaggaggagatactatagaTGTATTTTCTGTAACTTTGTAACATGGTGTTCTTTTTTTGTTTGGTTTTCTGTGTTACGGTTGGTATTTTGTTCATTTTTGTATGGATAGTGAAGGAAACATTAACCTAGGTTTGTGTGTTTCATAATGCACTCAAAGCTACTGTGGACCTATTACCCTATGGGTAGGAATAAAAAGGAACAAATATCAAAGTGTAACATATATGAACTCTAGTCACTTTTTTTCTGTAAATAAAAGCACTCGACAACTTCTGTGGTGACAACTGTTCCAGTTTAAACTGATATGTATGTGGAATTATTTGCTGCCACATAAATCATTTTGAAAACCCCAA
>XM_036977505.1
GGATTTCTGGagtctctacccccccccccccccacccctccccccaccaccacctcccctcaccaccaacaccacccctCTCTCGGCAGAGCCCAGAGCCTCACCATCTCCTGCCACGGATAGGCAGTGGTCACGGAGACACGGAGCTAGACAAGAGGAAACCTACTGAGGAGGGGGAGACGTGCACAGAGCCATTTTCTTGGAGGAGCCAGTGTGCCGTTGATGGGAAGAGGATGCATTGTGGGCTGCTGGAGGAGCCTGATATGGATTCCACAGGCTTTCCCCTGATCTGTGGGCCATCTTGCCGTTTTCTAGAGAGCTGGATTGAAAGATGCCTCAACGAGAACGAGAGCAAGCGGTGTTCCAGCCACACGTCCCTGGGGAATACGTCCAATGACGAAAATGAGGAGAAAGAAAACAACAGGGCATCTAAACCACATTCAACACCAGCTACCCTACAATGGCTGGAGGAGAACTATGAGATTGCAGAAGGGGTTTGTATCCCCCGCAGTGCTCTCTACATGCACTACCTGGACTTCTGTGAGAAGCACGACACACAGCCTGTCAACGCCGCCAGCTTTGGGAAGATTATTAGACAACAGTTTCCACAACTAACCACAAGAAGACTGGGGACCAGGGGACAGTCAAAGTACCACTATTATGGCATCGCTGTGAAGGAGAGTTCCCAGTACTACGATGTGATGTATTCCAAGAAGGGGGCGGCGTGGGTGAACGAGACTGGCAAGAAGGAGGTCACCAAGCAAACAGTGGCGTATTCACCACGCTCCAAACTGGGGACGCTCCTGCCAGACTTTCCAAATGTCAAAGACCTAAATCTGCCCGCCAGTCTGTCAGAAGAGAAGGTGTCAACGTTCATCATGATGTACAGAACTCACTGCCAGAGGATACTGGATACAGTAATACGCGCAAACTTTGACGAGGTCCAGAGCTTCCTGCTGCACTTTTGGCAGGGCATGCCCCCGCACATGCTCCCTGTCCTGGGCTCCTCCACTGTGGTCAACATTGTGGGCGTCTGTGACTCCATCCTCTATAAGGCAATCTCTGGGGTTCTCATGCCCACAGTCCTTCAAGCACTGCCTGATAGTTTGACCCAGGTTATCCGGAAGTTTGCCAAACAACTGGATGAGTGGCTTAAAGTAGCACTTCACGACCTGCCTGAAAACCTGAGGAATATCAAGTTCGAATTATCTAGAAGATTTTCTCAGGTTCTCAAGCGGCAGACATCTTTGAACCATCTATGTCAGGCGTCGCGGACGGTGATCCACAGTGCAGACATCACCTTTCAGATGATGGAGGACTGGAGGAACGTGGACCTGAACAGCATCACCAAGCAGACACTTTACACCATGGAGGACACACGGGAGGAGCAACGGCGGCTCATCATCCACTtGTACCAGGAGTTTGACCGTCTTTTGGAGGAGCAGTCTCCTATAGAGGGCTACATAGAGTGGCTGGACTCCATGGTGGACCGCTGTGTTGTCAAGGTGGCAGGGAAGAGGCCTGGGTGCCTGAAGAAGGTGGCCCAGCAGTTCCTGCTTATGTGGTCGTGCTTCGGGACACGAGTCATCCGGGATATGACCCTCCACAGTGCGCCGAGCTTTGGCTCGTTCCACCTGATCCACCTGATGTTTGATGACTATGTGCTGTACCTACTGGAGTCCCTGCACTGCCAGGAGAGGGCTAACGAGCTCATGAGGTCCATGAAGGCAGAGGGCAACACAGCTGAGCAAGAGGAAGAGATGATGCTGACGGAGACCACGCCCACATCCACGTCCCCAGGGCCTTTCTCCCCGGCCAAGTCTGTCACCTCAGTGGGGGTCCCAGCCGCCAGCTCCCCCGCTGCTGCCCAGTCCCCAGAGTACACAGGGGCCACAGCCACcacagGAGCTGTTCAGTCATATACCTGGTCCCTTACGTACACAGTGACAACGTCAAGCGGCACCCCTTCTGAGGGCGGACAGCAGCAGCCTTGCATGCGCAGTGGTGCCCCAGTGCCCCCTCCCTCCTCCGCCCATCGACTGCCAGTCTACGCACACCGGGATGAGCACGGGTTCACTGGGAGCTATAACTACGGAAGCTACTCCAACCAGCACCCCCACTCCATCCAGAGCCAGTACCCCAGTCTGGCCCATGAACCGGGCATTCCTGCCCCCCTCCATTATCCCGCCTACCACCGCACTTCTGCACAGTACCCACTCAACAGCCAGATGTCACGGATGGAGCCCTGCTTGATGGGAGGTACTCCTCGGCTGCACCCTACGCCTGTGACCCCCCGGTGGGCTGATGTCTCACCGGCCAACAGCTGTTACACCAGTCCCCCTATACACTCCTCCCGCTACGCCGCCTCTGGAGACATGTACTCCCCCCTGGCCCCTCGCAGGAACTCTGAGTATGAACACTCTCAACACTTTCCCGGTTTCGCCTACATCAACGGAGAGGCCACTACAGGCTGGGCCAAGTAGGCTTTCAATTCAGCCCTCAGAGAGAGGAGCTCCCCTGGGCACAGTCATCCCCATGCAGCCTGCCTGCCAAGCCTATGGATGCAAACGTCCCACTGCCTTTCCCCAACACGACCCAGAGGCACCTAATCAGGAGTATCAGTGTAATGGTAGGGGAGAGAGGCTGCAGAGTAGCAACACTGGGTTACCTGAGCCACAGGCCACAGCACAGAGAACCAAGCTAAGATTCAGGACTTCTTCTCACATTACACAATCAGAATATTGTGGTGTAGGCCTAGTCTGTTCAGGGCAGCAATCATCTCAATGGTGGAGCTGTTTGCAGAAAATGGCAGTGCAAACGGAGGCAGTCGGAATAATCTCACATATGGAAGTGTGCAGTGTGGCCTACACAGCTGTGCCTTTGCAGTCGATGAACACCCATCCCTGCAGTCGAccaacagatgtaggatcttagttTTATCACCCTGTTGTTGAGGAAATATCCTGCACAGTAGTAAATGCAAATTTGTATTGTATTAAaaggttttaaaaggcttctagaATTTGTCATTTCCACTTCAAAATGATTTGCCTTAACAAAAAATGTTTCAAACCCTACAAAAATGCTGGAGGATTATTTTTCTGCAGTGAGAAAtgtatcaaattaagatcctacatctgtaccaagtcaaaaaaacactcatcacccctccctccctgtactcAGCCACTAATGTACGCAACCAATGTAACTCTGTTAACGTTGTCCACTGTGGCTGACGTCAGTATGGCCTCTTAACGACGTACGCTGTTTTCACTTGGTCAGCACCACCGCATTGCCTGTGTGGGCTCAGAGCAGGCCTCTCAGATGCTGTACAGAAGACAAGCTTCAGCCTGATGCAGaaccagggtcgtattcattacgGCACAACAGAGCAATacattttgcaacggaaaatTAATATAGTATTTCTTATTGGGTTCAGGTTGTCATTCCctatttcagtctgttttcttcagtttggtggctaatgaatacaacccaggaTGGATTGCCTTATTGTTTCACCGCTGGAGTGCTGTGCCTCAGCCAGATTATTTGTGTGCTTTGTCACAAGCTCTGTTGCTGTAtttgtgagaggaggaggagatactatagaTGTATTTTCTGTAACTTTGTAACATGGTGTTCTTTTTTTGTTTGGTTTTCTGTGTTACGGTTGGTATTTTGTTCATTTTTGTATGGATAGTGAAGGAAACATTAACCTAGGTTTGTGTGTTTCATAATGCACTCAAAGCTACTGTGGACCTATTACCCTATGGGTAGGAATAAAAAGGAACAAATATCAAAGTGTAACATATATGAACTCTAGTCACTTTTTTTCTGTAAATAAAAGCACTCGACAACTTCTGTGGTGACAACTGTTCCAGTTTAAACTGATATGTATGTGGAATTATTTGCTGCCACATAAATCATTTTGAAAACCCCAA

Function

NR:

description
transcription factor RFX4

GO: NA

KEGG:

id description
K09174 RFX4; regulatory factor X 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601283.2 False 3878 mRNA 0.51 18 41188896 41218735
XM_036977505.1 True 3950 mRNA 0.51 18 41188896 41218768

Neighbor

gene id symbol gene type direction distance location
LOC110522809 LOC106573298 coding downstream 28067 41132695 ~ 41160829 (-)
LOC110522807 NA coding downstream 91564 41086591 ~ 41097332 (-)
LOC110522804 LOC106561421 coding downstream 204039 40948339 ~ 40984857 (-)
LOC110522782 LOC106573302 coding downstream 245079 40920939 ~ 40943817 (-)
ube2na ube2n coding downstream 284071 40880481 ~ 40904825 (-)
LOC110532287 LOC105925092 coding upstream 4764 41223532 ~ 41273234 (-)
LOC110522853 LOC106573294 coding upstream 165023 41383791 ~ 41407137 (-)
zgc:153031 LOC106573293 coding upstream 213086 41431854 ~ 41441159 (-)
cry1b LOC106573292 coding upstream 224680 41443448 ~ 41459268 (-)
LOC110532313 LOC106573268 coding upstream 811465 42030233 ~ 42058225 (-)
G44767 NA non-coding downstream 66475 41121440 ~ 41122421 (-)
G44798 NA non-coding downstream 75067 41113524 ~ 41113829 (-)
G44790 NA non-coding downstream 105073 41083281 ~ 41083823 (-)
G44788 NA non-coding downstream 107813 41080610 ~ 41081083 (-)
G44787 NA non-coding downstream 108513 41080054 ~ 41080383 (-)
G44885 NA non-coding upstream 65232 41284000 ~ 41315061 (-)
G44892 NA non-coding upstream 71545 41290313 ~ 41292901 (-)
G44917 NA non-coding upstream 106751 41325519 ~ 41325739 (-)
G44923 NA non-coding upstream 113113 41331881 ~ 41332182 (-)
G44925 NA non-coding upstream 114320 41333088 ~ 41333338 (-)
G41868 NA other downstream 2166871 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 2997160 38187488 ~ 38191736 (-)
G40732 NA other downstream 3063171 38125280 ~ 38125725 (-)
G40079 NA other downstream 3471863 37716540 ~ 37717033 (-)
G38855 NA other downstream 4678067 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 1819960 42852829 ~ 43129052 (-)
G49774 NA other upstream 4502037 45720805 ~ 45721124 (-)
G49962 NA other upstream 4730190 45948958 ~ 45949951 (-)
G51214 NA other upstream 5846006 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 6070171 47288939 ~ 47289681 (-)

Expression


Co-expression Network