zgc:153031 (LOC106573293)


Basic Information

Item Value
gene id zgc:153031
gene name LOC106573293
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 41431854 ~ 41441159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601322.2
GGCCGCAAATTCCAGAAACTCATTCTCCACACACAAAAACGTTGGATTCAACAAGCAAAATACTTACCCTCGCCCCCCTGTCTACAGTTGCCTTTGGCTTTGGTCATACTCGGTAGAACAATTCAGTGGTTGTTATGCACTGAATTTATCCTCATCCAATGCGTTATTAAGCCTGCTTGCGTGTCTGAGCGAGTTATATAAACACTTGTAAACTCGTTAAACCAGCCTGTTCACACTGTACCATCTACTAACGTATCGACGATGTGCGCGGACAAAGTACAGAGGAAACCGTTGCGGCTCATCGCCGCTGCATGCAACAACATGGGAATAGGAAAAGATGGACACTTGCCATGGGATTTACCGACAGAATTCAAATTCTTTTTGGAAACTACAACAAATGTCTCCCTACCAGGAAAATTTAACATGATGGTATGGGGCAGGGGCTGCTGGTTCTCCAACCCAGACAGTTTTTTCTCTATGCTGCCCAATGTCCTCCATGTGGTCCTGAGTACCACCCTGAGTACTCTCCCGGAGCATGCCCACTTCCTGTGTCAAGATTTCGACAGCATGATCAGCTTAGCCTTGCTGCAACCCCTATGTGACCTGGTGGAGACCATCTGGGTTGTGGGTGGTCCACGGGTCTATCAGGAGGCTCTGATGCATCCCTGGTGTGAACTCGTCTTCCTCACTGACATCATGGCTGACTTCGACTGTGACGTCTTCTTTCCGCAGTTTGACCGAAgcatttttaaaaaacaacagaGGTTTCCTGGAGTACCAAATGAGATTCAGGAGGAGAATGGGGTTACATTTAAGTATGAAGTTTTCAAGAGGGAGATCTGTAGCGCTGAGGTCCAAACCAACATGGCTCTGTCTGAGTCAGAGATTATGTCAGATGAGTGGTCTGGGGTGACTCATAACAACATGGGCACTAAGGATGTGGGGGTTGTTCCTGATAGTGCCTACGTAACAGAGGGCGATATTTATGTCTGAAGATTTCATAACATATTGCGATTTACAGCATGAAGTCGCCAACCAAAGGCTGGAAATCAGCCTTGAATGGTTTTACATGTATAGTTATGATTCTATCAAAAGAGTATAAGAGTGCTTAATATGAGCCAGGAAATACATATTTTATTCCAGATAAACAAAACATGTCTTACTTATTCTGAATGATGTTTCTTGAAAGGTGTAGGAGAGCTGTTATTAAATTTATTGCAAATGTTTACAATTGAGGAATCTCTGCAATGTAGTGATATACATTGTAATGATACTTACATACAGTTCCTTTGGGGAAAACATGCATCTTCTATTGTAAATTCTTCAACTTGGCATGATATTGTATTTGTCATCATGGCTAATTGAATCACTTGTCAATCAGTAAATATTCATACAACTCCCATCTTTCAGTACACAATGTTGGAGTAAATGATCCACTAGATGGAGACATAAGACAAGACATAGAGAACAAAGTGCCCCCTGAAACCAATTTCTTTCCCTTtctacaaaaataaaaacatgattgAATGTCATGGATGTGGGTGAA
>XM_021601326.2
ATGTGGCCGCAAATTCCAGAAACTCATTCTCCACACACAAAAACGTTGGATTCAACAAGCAAAATACTTACCCTCGCCCCCCTGTCTACAGTTGCCTTTGGCTTTGGTCATACTCGGTAGAACAATTCAGTGGTTGTTATGCACTGAATTTATCCTCATCCAATGCGTTATTAAGCCTGCTTGCGTGTCTGAGCGAGTTATATAAACACTTGTAAACTCGTTAAACCAGCCTGTTCACACTGTACCATCTACTAACGTATCGACGATGTGCGCGGACAAAGTACAGAGGAAACCGTTGCGGCTCATCGCCGCTGCATGCAACAACATGGGAATAGGAAAAGATGGACACTTGCCATGGGATTTACCGAAAATTTAACATGATGGTATGGGGCAGGGGCTGCTGGTTCTCCAACCCAGACAGTTTTTTCTCTATGCTGCCCAATGTCCTCCATGTGGTCCTGAGTACCACCCTGAGTACTCTCCCGGAGCATGCCCACTTCCTGTGTCAAGATTTCGACAGCATGATCAGCTTAGCCTTGCTGCAACCCCTATGTGACCTGGTGGAGACCATCTGGGTTGTGGGTGGTCCACGGGTCTATCAGGAGGCTCTGATGCATCCCTGGTGTGAACTCGTCTTCCTCACTGACATCATGGCTGACTTCGACTGTGACGTCTTCTTTCCGCAGTTTGACCGAAgcatttttaaaaaacaacagaGGTTTCCTGGAGTACCAAATGAGATTCAGGAGGAGAATGGGGTTACATTTAAGTATGAAGTTTTCAAGAGGGAGATCTGTAGCGCTGAGGTCCAAACCAACATGGCTCTGTCTGAGTCAGAGATTATGTCAGATGAGTGGTCTGGGGTGACTCATAACAACATGGGCACTAAGGATGTGGGGGTTGTTCCTGATAGTGCCTACGTAACAGAGGGCGATATTTATGTCTGAAGATTTCATAACATATTGCGATTTACAGCATGAAGTCGCCAACCAAAGGCTGGAAATCAGCCTTGAATGGTTTTACATGTATAGTTATGATTCTATCAAAAGAGTATAAGAGTGCTTAATATGAGCCAGGAAATACATATTTTATTCCAGATAAACAAAACATGTCTTACTTATTCTGAATGATGTTTCTTGAAAGGTGTAGGAGAGCTGTTATTAAATTTATTGCAAATGTTTACAATTGAGGAATCTCTGCAATGTAGTGATATACATTGTAATGATACTTACATACAGTTCCTTTGGGGAAAACATGCATCTTCTATTGTAAATTCTTCAACTTGGCATGATATTGTATTTGTCATCATGGCTAATTGAATCACTTGTCAATCAGTAAATATTCATACAACTCCCATCTTTCAGTACACAATGTTGGAGTAAATGATCCACTAGATGGAGACATAAGACAAGACATAGAGAACAAAGTGCCCCCTGAAACCAATTTCTTTCCCTTtctacaaaaataaaaacatgattgAATGTCATGGATGTGGGTGAA

Function

NR:

description
dihydrofolate reductase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601322.2 False 1546 mRNA 0.42 7 41431854 41441155
XM_021601326.2 True 1500 mRNA 0.42 6 41431854 41441159

Neighbor

gene id symbol gene type direction distance location
LOC110522853 LOC106573294 coding downstream 24717 41383791 ~ 41407137 (-)
LOC110532287 LOC105925092 coding downstream 158620 41223532 ~ 41273234 (-)
LOC110522810 LOC106573296 coding downstream 213086 41188896 ~ 41218768 (-)
LOC110522809 LOC106573298 coding downstream 271025 41132695 ~ 41160829 (-)
LOC110522807 NA coding downstream 334522 41086591 ~ 41097332 (-)
cry1b LOC106573292 coding upstream 2289 41443448 ~ 41459268 (-)
LOC110532313 LOC106573268 coding upstream 589074 42030233 ~ 42058225 (-)
uri1 LOC106573169 coding upstream 640847 42082006 ~ 42096581 (-)
LOC110532319 thas coding upstream 910205 42351364 ~ 42461424 (-)
LOC118964616 NA coding upstream 1026315 42467474 ~ 42473409 (-)
G44971 NA non-coding downstream 39736 41390723 ~ 41392118 (-)
G44959 NA non-coding downstream 63242 41368258 ~ 41368612 (-)
G44951 NA non-coding downstream 68458 41363164 ~ 41363396 (-)
G44946 NA non-coding downstream 74852 41356730 ~ 41357002 (-)
G44928 NA non-coding downstream 92916 41338708 ~ 41338938 (-)
G45089 NA non-coding upstream 171061 41612220 ~ 41613420 (-)
G45134 NA non-coding upstream 219723 41660882 ~ 41661111 (-)
G45136 NA non-coding upstream 220670 41661829 ~ 41662033 (-)
G45137 NA non-coding upstream 220965 41662124 ~ 41662392 (-)
G45141 NA non-coding upstream 225957 41667116 ~ 41667496 (-)
G41868 NA other downstream 2409829 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 3240118 38187488 ~ 38191736 (-)
G40732 NA other downstream 3306129 38125280 ~ 38125725 (-)
G40079 NA other downstream 3714821 37716540 ~ 37717033 (-)
G38855 NA other downstream 4921025 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 1597569 42852829 ~ 43129052 (-)
G49774 NA other upstream 4279646 45720805 ~ 45721124 (-)
G49962 NA other upstream 4507799 45948958 ~ 45949951 (-)
G51214 NA other upstream 5623615 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 5847780 47288939 ~ 47289681 (-)

Expression


Co-expression Network