mmp15a (LOC106573210)


Basic Information

Item Value
gene id mmp15a
gene name LOC106573210
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 44821497 ~ 44835486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978241.1
ACCGCTATCCTCCCCTTCTTTCTAGCAGAACGTCACTACTCCCTTTTTGTTTTCTAGCAGATCTCAGAAGGCAGTGAGTTTATTGGACTATCAATGTCCAACACAGCCTGCAAGAGGCATGCTGTGGTTGAGGGGAAATAAGGAAATCTAACGGATGCCTTCTGGCTACTTGGGGGGAAATCATTTAAGACAATTgcatttttgttcatttttattAGCCTACAGGTTATCCTCCACATTGAAGTTTTTCAGCAAAGTGCATTGTGCATTGGATGGATACATAATCGTACCACAAAGAAGACAAAGCTTGTTGCaactaaaatacttttttttcgtTCCTGTTCTTCTCCCTCCCTGAATGTGTAGAGTGGAAGGAGCACGCAGTCTGATATCTGTAATATGCCAGAGGAAATTACCGTTTAAACATTAGACCGTGTGGGACATTAGGACATGGGATTTAACAGAAAAACTGACTCCGGGCTTTGAATAACCCGTGATCACATCTTTGGGGGAAATTGCAAATGAAGTATTTCTTCCTGTGAGATTAAGCCGAACTGTTTCGGAAACTTGGATAGTTTGCAAGCGATCTGATTTGAGCGCACCGCGACCTAAATAATGGCCAGGGGTTGAAGTGCGGAGAGAACTTCTAAAACACACAGGAAAAACTGTATTTTGaatttaacaaaaaaaaagtgtatgTAGTCACATAGCGGTTCACTCATCACTTGACAGAACTTTGCATTGACAACCGACTCTGAAAATCCCTCGCACGGGCTAACGAGTGCGCACAAAGATGGCAATCCTTTGGAGGCGCGCTTCTCTGGGGCTGTGGAAACAAATAATGGCTCCGCTCGTCTTGCTCTTGTGCAACAGGCTTGTGACCAATGCGGACGATGACACTTTCAACGCAGAGTCATGGTTGCGGAGTTTTGGCTACCTGTCCCAGGCCAGCAGACAGATGTCCACCATGCAGTCCTCTCAGATCCTGTCAAATGCTGTCAGCGACATGCAGCGCTTCTATGGCCTGGAGGTCACTGGAGAGATGGACGATGCCACACTGACGGCCATGAGAAGGCCTCGCTGTGGAGTCCCAGACAAATCTTTTGGGCAGACTGAGAACGGTATGAGGCGGAAACGATACACTCTCACTGACCAGAAGTGGGACAAGAACCATCTGACCTACAGCATTATGAATACTACCCCAAACGTCGGTGAGGAGCGGACACGAGAAGCCATCCGCAAGGCCTTTTTGGTGTGGGAGCATGTGACACCACTGAGCTTCGAAGAAATCGCCTTCCAAGACGTCACCAACAGCAGCCAGGACGCGCTAGATATCATGCTGTTGTTTGCCTCTGGTTTCCATGGAGACATGTCTCTGTTCGACGGCGAAGGGGGATCCCTGGCTCATGCCTACTACCCAGGGCCCGGGATGGGCGGAGACACACACTTTGACGCAGACGAACCGTGGACCCTTGACAACCATAATCCATCAGGTATTGACCTGTTCCTGGTTGCGGTGCATGAGCTGGGCCATGCTCTGGGCCTGGAGCACTCTGACAACCCCAGTGCCATCATGGCTCCCCTCTACCAATACATGGACACAAAGACCTTCTCACTCCCGGACGATGACAGGAGTGGAATACAGAAGATATATGGGCCTCCAGACGATGCTCCCACTCaggacccccccaccaccaccagtgATGACACCGCCCCTCACCaagaccccaccaccactactcctCCAGATCTAAACCCCACCACCCCCCCTTATAGTTCTCTCCAGACAGACCCCCCCAGCCCCACCTATGACCCTGACACCCCAGACCAACCAGAACCTGAACCAGATCCCACCGACGCACCTCACCTCCCTCCAATACCTGACCCAGAACCCACCATCCCCTGGCCCGACCCTGTGCCGGTGACCCCCTACATCAGGAGAGATGAGCCTCGTCGCCCTGTGCAGCCAGACCACACCGCCCTGGACATCTGTGACGGGGACTTTGATACGGTCACCATGCTGCGAGGGGAGATGTTCGTCTTCAAGGGTCGCTGGTTCTGGAGAGTTAGAAGGAACCATGTTCTGGACAACTACCCAATGCCCATTTCTGTCTTCTGGGTTGGACTACCTGATGATATAGACTCTGGCTATGAACGGCACGACGGGAAATTTGTCTTTTTCAAAGGGGACAAGTACTGGGTGTTCAGGGAGGCTGACGTGGTGCCTGGTTACCCCCAGCCCCTGGTAGAGTATGGTCAGGGCATCCCCTCAGACAGGATCGACACAGCTATCTGGTGGGAGCCCACCGGCTACACATACTTCTTCAGAGGAGACAGATACTGGCGTTTTGATGAAGAGTCCCGCACCGGTGACAAAGACTACCCTAAACCTGTCTCCAGGTGGGGCAAGGTCCCATCCTCTCCTAAAGGAGCCTTCCTCAGCGACGATGGCGCTTACACCTACTTCTACAAGGGCTCCAAGTACTGGCGGTTTGATAACCAGAAAATGAAAGATGACCCAGGCTATCCTAGATCCATCCTGAAAGACTTTATGGGCTGTGAGGGAGCACCGGATGTGGACCCCGATACAGATGACACAGTAACGGGCGGCAAGTGGCCCACAGTCGACCAACCAAAACCTCAACCACCAATTGGCTCCGACCCGGATGATGTGGACCGTGACACAGATACGGATTACACCAACGATGTGGATTATGAACCTGATGCAGAGGACAAAGAGGTGGATGTGGTGGTGAGGATGGCTGAGAACGAGGCCAAGGTTATGACCCTGATCATGGTGACCGTGCCCCTGGTCCTGGTGCTGTGCATCCTACTATTGGTCTATGCTATTATCAACACCCTGCAGAAGAAAGAGGCGCCCAGACTTTTGGTCCATTGCAAACGATCCCTGCAAGAGTGGGTTTGATGTGCTCCAGAAatggattcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcaccatacacaggcacatacagtacacacacaaacattgcaTACAAACGCAAGCACATAATCTCCCTATCGTTCCTCCTTTACCAGTTTATAACAGGCAATTTGCACTTTTAACACCCAGTGttttgattttttgttgttgttagttAGTTTGTACCCTGTTGTAGTTTTATGTGTTCAAGCCAAGGATATCCACAAATGTCCTTATAAAACAGAGTGGTGGTGCCTGTCTACAACCAGCAAAGGAATGTCTAACTGTTGTGTGTGCTGAAAAGACAAAAGACCACCACCTCCCACTGTGTCTTTCCTCTAGTCTACAACAGCCCGGACTTTATCCATAAAAGGGCGGATTTAGATATTGATATTCAGACCCCCTTGGGGTGAAATTAAATACAGGGGTTCAAAAAGTGGTATATCTCATTGTACACATATTTAGGAAGGCTGAAAGTCTGCTAGAACGGAGTCTGGTTGACATTACCCAGATGTTGCTGATTTAGTCATTTTGGCTGCAGAGCCGGGGGAAGGGTTAGGATGCCTGCCAGCATTTCCTTTTCCTGAGTTAGAGTTATTTTCtctttggagggggggggggcaaggggaGGGGCTGAGCGGAGCTACATTGGCATTGTGCCTCCTGACCTAGATTAGCGAGGCCCACTCCTATTTTTCAAAACTTCTTTTACTGAGCGGTTTGGCTGGTGATGTCTTCCTGTGAGACTCCCCCTCCCCTGCCGCTATGTTTCACTGTAGACATTCTCCATCTGCAGTCGCTGTTTGGATCTGAGAATCTGCTCTATACCTAGGAGAGGCTTTAGTTCTAATCTGTGATGATGGTGtcacagggctttgtgatgaggACTGTTGGAGTATTCACGTTGAACTTAACCATAAATTATGTCTTACAACTCTTTGttgccatttttttattttattttattaaaatgcCCCTCTGTGGGACTTCTTCCTTCGTTGCCAACTCTTTGTGTGCCAACCTCCCTCATTCAAAGGCCAAACACTTTTTATACTACACCCAGAGTGCAATTATTTTTTTGCGCAATAGACAGATGAAGACCATTAGTCCTAGAGGTTTTTCCTCAGCAAAGCCACTATGCACAAGTAAACAAAAAATGGTTGTATATGCTTCAGGTTTGGGGTCGGTTGTGAATCACCCGTGTTTTGTCATTTATTGTTTGTGTTTTGTATTAGTCGGTTGTTGGAGAGGAACCAATActtttaaaaacatattttttaaaaaaCGTTTGAAAATTCGCACAACATTTTGTGTTGTGCTCTCTGTACATTAGCAGAGTTAAATGATGCATGCAGGACATGTAAATGTATGAAATGTATAAGGATTTCAAAATAAAACATGAATCATGGCAAACA

Function

NR:

description
matrix metalloproteinase-15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978241.1 True 4404 mRNA 0.48 10 44821497 44835486

Neighbor

gene id symbol gene type direction distance location
LOC118960022 LOC106573206 coding downstream 3956 44816985 ~ 44817541 (-)
LOC110523630 LOC106561447 coding downstream 11117 44793384 ~ 44810380 (-)
lrrc29 LOC106573211 coding downstream 28665 44787137 ~ 44792832 (-)
LOC110523596 LOC106573203 coding downstream 101530 44712220 ~ 44719967 (-)
LOC110532336 NA coding downstream 113639 44691144 ~ 44707858 (-)
LOC110520774 NA coding upstream 65190 44900676 ~ 44901611 (-)
LOC110523666 LOC106573213 coding upstream 280417 45115903 ~ 45142315 (-)
LOC110523718 LOC106573216 coding upstream 414528 45250014 ~ 45256049 (-)
LOC110523724 LOC106573217 coding upstream 421750 45257236 ~ 45299871 (-)
parvaa LOC106573218 coding upstream 469152 45304638 ~ 45321671 (-)
G48715 LOC106561448 non-coding downstream 48507 44772501 ~ 44772990 (-)
G48670 NA non-coding downstream 136338 44684910 ~ 44685159 (-)
G48666 LOC106573200 non-coding downstream 141111 44679750 ~ 44680386 (-)
G48655 NA non-coding downstream 159669 44661524 ~ 44661828 (-)
G48629 LOC106586027 non-coding downstream 189725 44626280 ~ 44631772 (-)
G48736 NA non-coding upstream 1990 44837476 ~ 44838859 (-)
G48738 NA non-coding upstream 4742 44840228 ~ 44840554 (-)
G48746 NA non-coding upstream 24235 44859721 ~ 44859990 (-)
G48779 NA non-coding upstream 67297 44902783 ~ 44903105 (-)
G48894 NA non-coding upstream 227169 45062655 ~ 45062876 (-)
tspan9a LOC106573177 other downstream 1692468 42852829 ~ 43129052 (-)
G41868 NA other downstream 5799472 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 6629761 38187488 ~ 38191736 (-)
G40732 NA other downstream 6695772 38125280 ~ 38125725 (-)
G40079 NA other downstream 7104464 37716540 ~ 37717033 (-)
G49774 NA other upstream 885319 45720805 ~ 45721124 (-)
G49962 NA other upstream 1113472 45948958 ~ 45949951 (-)
G51214 NA other upstream 2229288 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 2453453 47288939 ~ 47289681 (-)
G51649 LOC106573246 other upstream 2542155 47377641 ~ 47378543 (-)

Expression


Co-expression Network