LOC118964862


Basic Information

Item Value
gene id LOC118964862
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52965815 ~ 52988549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052073.1
tggctgtgtactcgattttctgcacctgtcaacaacgggtgtggctgaaatagcagaatccacaaATTTAAGGTGTGTCCACAGACTTTTGGCCACGTAGTGAATATAAATCTCTTTCACCTAAACAATGCTCATATTTTGATTGACAACTATTCCACCATGTGATGAATTGCACTGCGTTGTGAGAGTTTCAGACTCCGTTTCAAGTGTACCGGCAGTGATTCTAAAAGTATGTGTGTGACAAAGTGAGTATGTATTTCCTTTGTTTGTTTATGAGATAGAGGATAAGATACGGTGTCACTATGTAAGAGAgtgcggttgtgtgtgtgtacgcttatttgtgtgtgtgtgtgtgtgtatgcgtattTGTGTATGAGtaagtaagaaagagagagagagtgcgtaagagagagagagagactgataaaagagagcaagagagtgtgCGGCAAAGCCTGTTGACTCGGTGTAAGAATGACTGCGTGAGTACTGGATGAACAGATCACACCCTCACACTGACGAGGAAAAGGCGGAGAGGAAGGCAGACTGAACAAGGAGAAAGAAGTCGGGGAGAAAGGAGACAGGAAGGCAAAGAAGAAAGCTagaggggaaggcagagagaggaagagacaggctAGCAGTACAGTCTCTCTGGTAGCAACGGCTCAAGGCATCTATTCCCTACTCTTTCTGTGGGCTTGTATAGAGACAGACATGAGGACTCTGagagctacagtatagtatatctTCATGGATAGGCTGGGTGGCTGGGCTCCTCTCCTTACAACCGGACAGCACAGCAACACAGGCAGCATGGAGATGATGCCTGAGGGACACCATATGTCTCACCGTGGGCGATTTTTAAACAGGCGAAGACCTCCCAAATACCCCAGAGCTTCCTGCCCTGCTTTGCTGATGCTGCAACGGTACTGTGTTGGACCTCGCTCCTCTTCAGGGAAGCTGTACTCTTGTATGGATGTATAAAATACTGCCAACTGTATTGCTAAAGTGCAAActttcaaaatatccacatactGCTTCTCCCTCTTGTTGGAAGTCAACTGTAGCCTGTTCTTGTGTGTATATAGGAAATACTACCCACTGTAACTGTATTGCTAGAGTGCAAGCTTGCGGAATTTCTCCAAGACCCCATCCTCCTTGTTTCCc
>TU64688
GTCGCTTTAAGTTTTCAAAAAAGAAGACGCAAGTTTTCACGATGGGCACAATGACAGAAAAAATACGATAAAGCGAAGTGTCTGTCTATGCTCGCGCCTCATCCGCCTGCGGGGAGACCAGACACCTGCACCCAAGCGTCGCACTTTGCTTTCGTTCTCGTTTAAAAGGAACATTATGCAAGTTTGACTTTTCTTATTTGAATCCGATGGCTGAATCTTGGTGATGCGAAGACCTCCCAAATACCCCAGAGCTTCCTGCCCTGCTTTGCTGATGCTGCAACGGTACTGTGTTGGACCTCGCTCCTCTTCAGGGAAGCTGTACTCTTGTATGGATGTATAAAATACTGCCAACTGTATTGCTAAAGTGCAAActttcaaaatatccacatactGCTTCTCCCTCTTGTTGGAAGTCAACTGTAGCCTGTTCTTGTGTGTATATAGGAAATACTACCCACTGTAACTGTATTGCTAGAGTGCAAGCTTGCGGAATTTCTCCAAGACCCCATCCTCCTTGTTTCCctgttcatgttgttgtttttttatcacTAATGATTTGGTTTCTGAATTCTACATTAGACCAGACCACAACCTCTGCTGTTAATTTTTTTGAATGTGACAGACATGCATGCACAAGTGAAATGAGATAAAGGacagtttctttctctctccaacccGTGACCTAGGTAACCTGTGACTTCCCTACATCCTACTTTCGTAACAAGCTGATCTCACGCCAGGCCATCGCATTGCTCTTCAAACCACAAATAGCCTACAACACCTATGTGCAGACAGTGACCTCTTCTGGTAGAATGAAGACAAGTTGAATGACCTCctacacactgaacaaaacacTAAATTGCTCCCCCCAGAAGCTGGTTTCCTATGGTGGTTTAGATGTGTGCTCGCTGTTCTAGCACCATATGAAATCAGTGTTCTGGAAGGTAGAATAGCAGCTCATGGAAACGGACCAAGCCATAGTTAAGAAAGTGAGAAATTGACATAGTGTGTTGTTGcatgtgtttgtctgtgtataCGGTAGGTACAATGACAAGTGTTCTTTGAGTGGTTTTCTAATAATGTTCTTACTGTTTGAAGCTACATTCTGTATTGACTTCTAATTTGTTAGTACACCAAATATAATTATGCTTCCATCAGTATGTATGACTCCATTATTTACAGGGACGGATTAATTCAGGGGATCACCGGGGCTGAAGCCCTTGGGCCTAAGAGGcaggaaaaaaaatctaataatgaaataataaatatatacagtaccagtcaaaagtttggacacacctactcatttcagggtttttctttatttttactattttctacattgtagaataatagtgagacaTCGAAtctatgaaataccacatatggaatcaagtagtaaccaaaaaactgctacacaaatcaaaatatgtattatatttgagattcttcaaagtaaccacccttcgccttgatgacagctttgcacaatcttggcattctctcaaccagcttcatgaggaatggaTATCAATTAACAGccatgccttgttaaaagttaatttgtggaatttctttcctttttaatgtgtttgagccaatcagatgtgctgtgacaaggtaggggtggtatacagaaaatagccctatttagtaaaatacctagtccatattatggcaagaacagctcaactaagcaaagagaaacgtcagtctattactttaagacatgaaggtcagtcaatccggaaatgtcaagaactttgaaagtttcttcaagtgcagtcgcaaaaaacatcaagcgctatgatgaaactggctctcatgtggaccgccacaggaaaggaagacccagagttacttcttctgcagaggataagttcatagtAAAAATACcaagtaaaaattaagaaaaacccttgattgagtaggtgtatccaaatgTTTGACTTACTgcatgtgttgccaccctagggacACGATATACTTGTAATTGTTGACAGACAACAGTAAAAAAAATTACCTCTTCCACActctcactttacggaattcaaaattacaatgtaTTCCATAATTTGGTCTGTTATGGATGGATAGGTTCAGCGTTTGTTGGCAaaatcagtgggttttgtgatgaatgagccatctgattcaatgaaggaGTTTGACTTTTTGCCCAtaatgtaatttaaggtgctccaaagctttttgctaagcttctttatataatttatctttgtttcatatcACAGTTTCATCTTCTTTTTGTTTAGTTTAGTCCCATGATTTCTCAGTTTAAAGTACATTTGACAATCAGCTGTttagccatttcataaatatgtcaagtgcagtgtctcgttgctcctcattacacacaacATACCAGCCAATATTAATTTATCTTCAACATATGAATCAGTACAAAACCtcttgtatgatctcttatacactatattaggcccaacctttggaactttggttttcctagatggCTACCATATTAGGATCACTACATCAGATAAATGTGGATACTGCTTTAGagcagatttctgcagcattagtaaagatgtgatcaatatatttggatgatttcattcctgtgctgtttgtatcGTGGTATATGATATCCCGAACCTGGTTTCAGggactggttacagtttgaagcttgaAAGCCGGTCAATATTTGGGTCACCCTGAAcaaatacctctctgttgatatcacatacattatcaaacatttcacacatattatacagatactgactgttagctcTTGTTGGTCTATAGCAATTTCCCACAATAataggctttaggtgaggcaggtgaacagctgtgagtctttctggatacgtctctaagagctttgcacacctagattcttttcaaaattcttcaagctattTTTTAATTGGTTGATCATTGCAAGACaatcattttcaagtcttgccatagattttcaagcaggtttaagtcaaaactgtaactcggccactcaggaacattcactgtcttcttggtaagcaactccagtgtagacttggtcttgtgttttaggttattgtcctgctgaacggtgaattcatctcccagtgtctggtggaaacctgactgaaccagattttcctctaggatttggcCTGAGCTTAGCTTCATTCCAATGATTTTTTATACTGAAAAACAGTCCTTAAAGATTACActataagcatacccataacatgatgcagccaccactatgcttgataTGGAGAATGGTACTCCGTAATatattgtattggatttgccgcAAACATAAAatgttgtattcaggacaaaaagttaatttctttgcaacattttttgcagcattactttagtgccttattgcaaacaggatgcatgttttgaatatttttattctgtacaggcttccttctttttactctgtcaattaggttagtattgtagagtaactacaatgttgttaaaacaatcagttttctcccatcacagccattaaactctgtaattgctttaaagtcaccattggcttcatggtgaaatccgtgagcagtttccttcttctccggcaactgagttaggaaggacgcctgtatatttgtagtgactggatgtattgatacagtgcccaaagtgtaattaattacttcaccatgctcaaagggctaTTCATTGTCAGATTTTTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052073.1 False 1167 mRNA 0.46 2 52979655 52985249
TU64688 True 3684 lncRNA 0.44 3 52965815 52988549

Neighbor

gene id symbol gene type direction distance location
LOC110524905 s35b4 coding upstream 16823 52955803 ~ 52962832 (+)
LOC110524881 LOC106573069 coding upstream 42780 52925635 ~ 52936875 (+)
LOC110524847 LOC106561671 coding upstream 54182 52904644 ~ 52925473 (+)
LOC110524844 LOC106573071 coding upstream 89795 52882870 ~ 52889860 (+)
LOC110524813 LOC106573076 coding upstream 256817 52707550 ~ 52722838 (+)
LOC110524916 LOC106573063 coding downstream 22735 53007984 ~ 53047685 (+)
LOC110524927 LOC106573064 coding downstream 74704 53059953 ~ 53072748 (+)
LOC110524948 LOC106573061 coding downstream 95724 53080973 ~ 53149689 (+)
LOC110524999 LOC106573060 coding downstream 173984 53159233 ~ 53181760 (+)
LOC110525010 LOC106573059 coding downstream 201769 53187018 ~ 53233174 (+)
G58205 NA non-coding upstream 36398 52942885 ~ 52943257 (+)
G58134 NA non-coding upstream 116881 52862572 ~ 52862774 (+)
G57811 NA non-coding upstream 231027 52744356 ~ 52748628 (+)
LOC110524804 NA non-coding upstream 277043 52698680 ~ 52702647 (+)
G57802 NA non-coding upstream 348332 52624389 ~ 52631323 (+)
G58229 NA non-coding downstream 11377 52996626 ~ 52996842 (+)
G58230 NA non-coding downstream 11975 52997224 ~ 52997430 (+)
G58192 NA non-coding downstream 45874 53031123 ~ 53031953 (+)
G58278 NA non-coding downstream 218827 53204076 ~ 53206257 (+)
G58187 NA non-coding downstream 248286 53233535 ~ 53314985 (+)
LOC110524575 fgf3 other upstream 1528720 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 2895659 50037523 ~ 50184257 (+)
G53181 NA other upstream 4085743 48893497 ~ 48893912 (+)
G52324 NA other upstream 4596398 48380542 ~ 48383257 (+)
G52080 NA other upstream 4954697 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 680966 53632830 ~ 53705421 (+)
G59031 NA other downstream 1002891 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 1059600 54044813 ~ 54089850 (+)
G59963 NA other downstream 1735939 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2920259 55905508 ~ 55923376 (+)

Expression


Co-expression Network