LOC110525756


Basic Information

Item Value
gene id LOC110525756
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59210006 ~ 59212175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473818.2
taggtggcggtaatgcaacatattggatgccaaccgccgttaaacctcatcgaagaaAACTGGGATAATTATGTGTCACGTGACGTGCGGAGTGACGACATATACTTTTCATTTGGCCATTTCCTGGGAGAAGACTTTAACGGCAAAGGAGTACTCTTTCCCATTTCCCCGGCAGATGGCGATGTTGAATCGTTTGTCTTTACCGTCCAAACGCATTGTTTGCAGCTGCCAAGAAACTCTTACAAACCTTTCCACGGGGGGTATCTAAAACATTCTCCATTCATGCTGCAAATgtgttgatttcctccttagctgGATTTAATGGCAAGAAATCGTGAAAAATATTGGGCAAGATATGTGTACTTTCTTCATGAAACCATTTTCCACCGCCATGCTTATGTGGTTTTAATGCTTATGAAGGCTAGTCCCGGATGATGCATATAGGTTGCAGCAGTATATTAGTACCAAACGACGTTCCATACAGTCTTCTGTTTACACCTGGCTGTCAGGGTGAACCGGTccgaaattacagcactttttgtacatagaccacccattttaggggaccaaaagtattgggacaaattcacgtgtgtgtattaaagtagtgaaaTGTTTGGTCgcatattcatagcacgcaatgactacatcaagcttgcgTTTCTACACATTTGTTGAAATCGTTTGCTGTTTGTGTTTCAgatcattttgtgcccaatataaattgaatggtaaatcatgtattgtgtcatttgagtcacttttattgtaaattatATGTTTCTAAACAATTATACAATAATGTGGATGtttaccatgattacggataatccagAATGAATCGTGGATAATGAGTGAGAAGGCTACAAATGCACAAAtatacccccaagacatactaacctctcaccattgcaacaggggaggttagcatttgtgcgtctaactttgtCATTGATCATTAtctaatcatggtagcatccacattcatgtagtgtttagaaacattaatttcttatttaaaaaaaatacttatcTTTTTACTACACGTAAGTGATTTTTCACAATACCAgatctattatgcgtgggaatactttggaataGATTTTCCAAATTAATATGACTTGGAGCTGATTGGCTGGTGTCCAGAAAACTTTGGGGAGCAAATAAAatcaccagttggggaaccctggggtagagagagatcagTAGACACTGTAACCAAGAGAGGTGGTTGTTAAAGGGGAAGTGGTAGTGAGCAAAAAGTTCAGAATCAGATTTATGCCTGTGAGTGCATATCAATTCTGTAAATCAGGCAAGATCTTGGTGCACTGTGTGACGGGTCAGGGGCGCTGGTCCTGGGGTATATGATGATCGAGTGAGGGAACTGGTCGACACTACGTCCTGCCTAATCGAGGCTTCCTCAAACGACTGACAGACCTGGATATACAACTACAGGAGGACATACtaagacactgacacacacacattcatcagtaaagaAGCAAACAGGAGATGAACTATAACAACATGAATGGAAGAAACTATAATAATCTGTCTGAATGCTCACTGCTTGTATGTTCAACTCCATTGTACTTTGTTAAATGTGTATATTGCCATAATGTTAAATTATTACACAGTAAATACACTATTAAAAAATCAAACATATTGTCATTTCATTCATATTTTGAAAGCAATATGGCGATGGCGCCTATCAATAAATGTGTTCTCAATTTACCTGGGGAAATTAAGACAAAAATAAATGTGTTAATTAAATATCCTTGGTAATTTGGGTTAGCAGCTCATATCGAGGATACATAGGATCCTTTCCTGAATCATAACAgtgattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473818.2 True 1847 mRNA 0.39 2 59210006 59212175

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc NA coding upstream 148126 59061807 ~ 59061880 (+)
fam160b1 fam160b1 coding upstream 371807 58808370 ~ 58838199 (+)
LOC110525578 NA coding upstream 1246183 57961716 ~ 57963823 (+)
wdr11 wdr11 coding upstream 1272018 57806134 ~ 57940604 (+)
LOC110525562 LOC106576893 coding upstream 1444608 57622267 ~ 57765398 (+)
erlin1 LOC106576878 coding downstream 72149 59284324 ~ 59299682 (+)
si:ch211-217g15.3 LOC106576876 coding downstream 128364 59340539 ~ 59342276 (+)
cxcf1a cxcf1a coding downstream 271306 59483481 ~ 59485882 (+)
cxcl12a cxcl12a coding downstream 377489 59589595 ~ 59631391 (+)
LOC110525860 NA coding downstream 387730 59599905 ~ 59608419 (+)
G64577 NA non-coding upstream 161747 59047544 ~ 59048259 (+)
G64440 NA non-coding upstream 348000 58858828 ~ 58862006 (+)
G64397 NA non-coding upstream 366957 58841159 ~ 58843049 (+)
G64394 NA non-coding upstream 369194 58840138 ~ 58840812 (+)
G64347 NA non-coding upstream 438972 58714329 ~ 58771034 (+)
G64645 LOC100196663 non-coding downstream 266 59212441 ~ 59234565 (+)
G64716 NA non-coding downstream 60036 59272211 ~ 59272491 (+)
G64718 NA non-coding downstream 63070 59275245 ~ 59280313 (+)
G65432 NA non-coding downstream 92591 59304766 ~ 59304983 (+)
G65441 NA non-coding downstream 108629 59320804 ~ 59321015 (+)
G64338 NA other upstream 509627 58699296 ~ 58700379 (+)
G64315 NA other upstream 544100 58665334 ~ 58665906 (+)
G64292 NA other upstream 622421 58586858 ~ 58587585 (+)
G63959 fgfr2 other upstream 986876 58221522 ~ 58223130 (+)
G63958 NA other upstream 1041828 58166565 ~ 58168178 (+)
G65442 NA other downstream 112461 59324636 ~ 59325129 (+)
G66188 NA other downstream 729311 59941486 ~ 59942064 (+)
G67806 LOC106581772 other downstream 2102699 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 2517590 61729765 ~ 61733388 (+)
G70011 NA other downstream 4062788 63274963 ~ 63275296 (+)

Expression


Co-expression Network