LOC110526511 (LOC100194723)


Basic Information

Item Value
gene id LOC110526511
gene name LOC100194723
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62383690 ~ 62390008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607542.2
TACAAGGGATTGCAAGTGTGTTTTACCTAGCTACATAAATTAAGTGCCATTACGCAGCCTACCTGCGCAAAAGATTTGTATGACGCCCTAAAATAACGTCATAATACAAGATGGCAGCCACCATTGGGAGACTACTAAAGACCTCTGTAATAGTTGCATCTGGAGGACTGAAAGCAGCTTTGCCACATGGAACTTCAGTGAGCAAGGCCTCAAGAATTCTCACCCATCCTGCACTGCAGAAGGCCTGTTTATCCACCAGTCCTGCCAAGTGGGCTCCAGCTGTCACTCAACATGCACCACATTTTAAAGCTACAGCTGTCCACAATGGCGAGTTTAAGGAGATGGGCCTAGATGACTTTAAGGGCAAATACCTGGTTCTTTTCTTCTACCCACTCGATTTCACATTTGTTTGCCCGACAGAGATCATCTCGTTCAGTGACAAGGCCAGCGAGTTCCATGACATCAACTGTGAAGTGGTGGGCGTGTCAGTGGACTCTCACTTCGCCCACCTGGCATGGATAAACACCCCACGCAAGGCTGGAGGTTTGGGTGAAATCCACATCCCCCTGCTGGCAGACCTCAACAAACAGGTGTCCAGAGACTATGGTGTACTTCTGGAGGGCCCTGGCATTGCACTGAGGGGACTGTTTATCATTGATCCAAATGGGGTGGTGAAACACATGAGCGTCAACGACCTGCCAGTGGGCCGCTGTGTGGACGAGACCCTGCGTCTGGTGAGGGCCTTCCAGTTTGTGGAGACTCACGGTGAAGTGTGCCCTGCTAGCTGGACCCCTGACTCTCCTACGATCAAGCCAACTCCCGAAGGTTCAAAGGAGTACTTTGAGAAGGTCAACGACTAGAGGACTTGCACTTCACAGCTTAATATTCAATAAAGTATCCACAACTGAAAAGAAAACACTGAATAGATATACCAAATATTTTCCATTAGGTTTAGATTAAAAAAAAGGTGCATTTGTGTTCAAAGCAATCAGAAAAAGACTTGTCAGAGTTGAAATATTTCATCCTGTTAGCTAGCTTCATGAACTTAATGTAATAAAGTTTCCCTTTCATCACATTGCTTGTATTGAGCCTA
>XM_036982113.1
TACAAGGGATTGCAAGTGTGTTTTACCTAGCTACATAAATTAAGTGCCATTACGCAGCCTACCTGCGCAAAAGATTTGTATGACGCCCTAAAATAACGTCATAATACAAGATGGCAGCCACCATTGGGAGACTACTAAAGACCTCTGTAATAGTTGCATCTGGAGGACTGAAAGCAGCTTTGCCACATGGAACTTCAGTGAGCAAGGCCTCAAGAATTCTCACCCATCCTGCACTGCAGAAGGCCTGTTTATCCACCAGTCCTGCCAAGTGGGCTCCAGCTGTCACTCAACATGCACCACATTTTAAAGCTACAGCTGTCCACAATGGCGAGTTTAAGGAGATGGGCCTAGATGACTTTAAGGGCAAATACCTGGTTCTTTTCTTCTACCCACTCGATTTCACATTTGTTTGCCCGACAGAGATCATCTCGTTCAGTGACAAGGCCAGCGAGTTCCATGACATCAACTGTGAAGTGGTGGGCGTGTCAGTGGACTCTCACTTCGCCCACCTGGCATGGATAAACACCCCACGCAAGGCTGGAGGTTTGGGTGAAATCCACATCCCCCTGCTGGCAGACCTCAACAAACAGGTGTCCAGAGACTATGGTGTACTTCTGGAGGGCCCTGGCATTGCACTGAGTTGTCCATTGTTCATTAGGGGACTGTTTATCATTGATCCAAATGGGGTGGTGAAACACATGAGCGTCAACGACCTGCCAGTGGGCCGCTGTGTGGACGAGACCCTGCGTCTGGTGAGGGCCTTCCAGTTTGTGGAGACTCACGGTGAAGTGTGCCCTGCTAGCTGGACCCCTGACTCTCCTACGATCAAGCCAACTCCCGAAGGTTCAAAGGAGTACTTTGAGAAGGTCAACGACTAGAGGACTTGCACTTCACAGCTTAATATTCAATAAAGTATCCACAACTGAAAAGAAAACACTGAATAGATATACCAAATATTTTCCATTAGGTTTAGATTAAAAAAAAGGTGCATTTGTGTTCAAAGCAATCAGAAAAAGACTTGTCAGAGTTGAAATATTTCATCCTGTTAGCTAGCTTCATGAACTTAATGTAATAAAGTTTCCCTTTCATCACATTGCTTGTATTGAGCCTA

Function

NR:

description
thioredoxin-dependent peroxide reductase, mitochondrial-like

GO: NA

KEGG:

id description
K20011 PRDX3; peroxiredoxin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607542.2 False 1093 mRNA 0.46 7 62383690 62390008
XM_036982113.1 True 1111 mRNA 0.46 7 62383690 62390008

Neighbor

gene id symbol gene type direction distance location
LOC110526492 LOC106576813 coding upstream 17491 62360989 ~ 62366199 (+)
LOC110526440 LOC106576815 coding upstream 215003 62153349 ~ 62168687 (+)
fam204a LOC106576816 coding upstream 286185 62064250 ~ 62097505 (+)
sec23ip LOC106576824 coding upstream 638533 61733628 ~ 61745157 (+)
inpp5f LOC106576825 coding upstream 673621 61687566 ~ 61710069 (+)
LOC110526533 LOC106576809 coding downstream 45274 62435282 ~ 62492911 (+)
LOC118965226 cdc26 coding downstream 50756 62440764 ~ 62441131 (+)
LOC110526548 LOC106576808 coding downstream 115163 62505171 ~ 62526302 (+)
LOC110526555 LOC106576807 coding downstream 195856 62585864 ~ 62608428 (+)
LOC110526580 LOC106576805 coding downstream 231952 62621960 ~ 62630539 (+)
G68132 LOC106576819 non-coding upstream 400769 61981733 ~ 61982921 (+)
G68130 NA non-coding upstream 405627 61977849 ~ 61978063 (+)
G68127 NA non-coding upstream 407593 61975881 ~ 61976097 (+)
G68119 NA non-coding upstream 418512 61964814 ~ 61965178 (+)
G68118 NA non-coding upstream 418938 61964237 ~ 61964752 (+)
G68384 NA non-coding downstream 24672 62414680 ~ 62416124 (+)
G68469 NA non-coding downstream 142161 62532169 ~ 62532538 (+)
G68472 NA non-coding downstream 145600 62535608 ~ 62535941 (+)
G68479 NA non-coding downstream 150107 62540115 ~ 62540433 (+)
G68498 NA non-coding downstream 178345 62568353 ~ 62568619 (+)
G67930 mcmbp other upstream 650302 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 1068438 61314874 ~ 61315252 (+)
G66188 NA other upstream 2441626 59941486 ~ 59942064 (+)
G65442 NA other upstream 3058561 59324636 ~ 59325129 (+)
G64338 NA other upstream 3683311 58699296 ~ 58700379 (+)
G70011 NA other downstream 884955 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 2419581 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 3525727 65915581 ~ 65922285 (+)
G73515 NA other downstream 3897671 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 4030487 66417495 ~ 66424081 (+)

Expression


Co-expression Network