RNA id: XM_036982113.1



Basic Information


Item Value
RNA id XM_036982113.1
length 1111
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110526511
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62383690 ~ 62390008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TACAAGGGATTGCAAGTGTGTTTTACCTAGCTACATAAATTAAGTGCCATTACGCAGCCTACCTGCGCAAAAGATTTGTATGACGCCCTAAAATAACGTCATAATACAAGATGGCAGCCACCATTGGGAGACTACTAAAGACCTCTGTAATAGTTGCATCTGGAGGACTGAAAGCAGCTTTGCCACATGGAACTTCAGTGAGCAAGGCCTCAAGAATTCTCACCCATCCTGCACTGCAGAAGGCCTGTTTATCCACCAGTCCTGCCAAGTGGGCTCCAGCTGTCACTCAACATGCACCACATTTTAAAGCTACAGCTGTCCACAATGGCGAGTTTAAGGAGATGGGCCTAGATGACTTTAAGGGCAAATACCTGGTTCTTTTCTTCTACCCACTCGATTTCACATTTGTTTGCCCGACAGAGATCATCTCGTTCAGTGACAAGGCCAGCGAGTTCCATGACATCAACTGTGAAGTGGTGGGCGTGTCAGTGGACTCTCACTTCGCCCACCTGGCATGGATAAACACCCCACGCAAGGCTGGAGGTTTGGGTGAAATCCACATCCCCCTGCTGGCAGACCTCAACAAACAGGTGTCCAGAGACTATGGTGTACTTCTGGAGGGCCCTGGCATTGCACTGAGTTGTCCATTGTTCATTAGGGGACTGTTTATCATTGATCCAAATGGGGTGGTGAAACACATGAGCGTCAACGACCTGCCAGTGGGCCGCTGTGTGGACGAGACCCTGCGTCTGGTGAGGGCCTTCCAGTTTGTGGAGACTCACGGTGAAGTGTGCCCTGCTAGCTGGACCCCTGACTCTCCTACGATCAAGCCAACTCCCGAAGGTTCAAAGGAGTACTTTGAGAAGGTCAACGACTAGAGGACTTGCACTTCACAGCTTAATATTCAATAAAGTATCCACAACTGAAAAGAAAACACTGAATAGATATACCAAATATTTTCCATTAGGTTTAGATTAAAAAAAAGGTGCATTTGTGTTCAAAGCAATCAGAAAAAGACTTGTCAGAGTTGAAATATTTCATCCTGTTAGCTAGCTTCATGAACTTAATGTAATAAAGTTTCCCTTTCATCACATTGCTTGTATTGAGCCTA

Function


GO: NA

KEGG:

id description
K20011 PRDX3; peroxiredoxin 3

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75404 lncRNA upstream 400769 61981733 ~ 61982921 (+) True G68132
TU75402 lncRNA upstream 405627 61977849 ~ 61978063 (+) True G68130
TU75399 lncRNA upstream 407593 61975881 ~ 61976097 (+) True G68127
TU75390 lncRNA upstream 418512 61964814 ~ 61965178 (+) True G68119
TU75389 lncRNA upstream 418938 61964237 ~ 61964752 (+) True G68118
TU75678 lncRNA downstream 24672 62414680 ~ 62416124 (+) True G68384
TU75782 lncRNA downstream 142161 62532169 ~ 62532538 (+) True G68469
TU75785 lncRNA downstream 145600 62535608 ~ 62535941 (+) True G68472
TU75802 lncRNA downstream 150107 62540115 ~ 62540433 (+) True G68479
TU75823 lncRNA downstream 178345 62568353 ~ 62568619 (+) True G68498
XM_021607506.2 mRNA upstream 17491 62360989 ~ 62366199 (+) True LOC110526492
XM_021607433.2 mRNA upstream 215003 62153349 ~ 62168687 (+) True LOC110526440
XM_021607421.2 mRNA upstream 286185 62064250 ~ 62097505 (+) True fam204a
XM_021607213.2 mRNA upstream 638533 61733628 ~ 61745157 (+) False sec23ip
XM_036982186.1 mRNA downstream 45274 62435282 ~ 62492911 (+) False LOC110526533
XM_036982214.1 mRNA downstream 50756 62440764 ~ 62441131 (+) True LOC118965226
XM_036982179.1 mRNA downstream 70052 62460060 ~ 62492911 (+) False LOC110526533
XM_036982195.1 mRNA downstream 70097 62460105 ~ 62492911 (+) False LOC110526533
XM_036982169.1 mRNA downstream 91555 62481563 ~ 62492911 (+) False LOC110526533
TU75188 other upstream 650302 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1068438 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2441626 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3058561 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 3683311 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 884955 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 2419581 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3525727 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3525727 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3897671 66287679 ~ 66288469 (+) True G73515

Expression Profile