RNA id: TU81252



Basic Information


Item Value
RNA id TU81252
length 791
RNA type TUCP
GC content 0.39
exon number 1
gene id G73515
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66287679 ~ 66288469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgcggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagcgcatcatgaagaacaaggaacacaccaggcaggtccgacatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatataccaagacctggccgtccctctaaactttcagctcatacaaggaaaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaatggaactttttggcaacaatgcaagacgttatgtttggcgtaaaagcaacacagcagaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81238 lncRNA upstream 18695 66268585 ~ 66268984 (+) True G73501
TU81233 lncRNA upstream 26086 66261094 ~ 66261593 (+) True G73496
TU81229 lncRNA upstream 31363 66256094 ~ 66256316 (+) True G73492
TU81225 lncRNA upstream 34337 66253121 ~ 66253342 (+) True G73488
TU81037 lncRNA upstream 268635 66014081 ~ 66019044 (+) True wu:fj16a03
TU81264 lncRNA downstream 22997 66311466 ~ 66347388 (+) True G73526
TU81279 lncRNA downstream 46826 66335295 ~ 66340770 (+) False G73536
TU81282 lncRNA downstream 46826 66335295 ~ 66342335 (+) False G73536
TU81285 lncRNA downstream 46826 66335295 ~ 66342335 (+) False G73536
TU81287 lncRNA downstream 46826 66335295 ~ 66341203 (+) False G73536
NM_001124310.1 mRNA upstream 268641 66014185 ~ 66019038 (+) False wu:fj16a03
XM_021608317.2 mRNA upstream 284339 66000257 ~ 66003340 (+) True LOC110527177
XM_036989801.1 mRNA upstream 287831 65993868 ~ 65999848 (+) True LOC110532572
XM_021608309.2 mRNA upstream 365394 65915581 ~ 65922285 (+) False LOC110527164
XM_021608300.2 mRNA upstream 376144 65898427 ~ 65911535 (+) True LOC110527154
XM_021599594.2 mRNA downstream 62942 66351411 ~ 66355894 (+) True prph2b
XR_005052559.1 mRNA downstream 129026 66417495 ~ 66422887 (+) False LOC118965274
XM_021608422.2 mRNA downstream 261794 66550263 ~ 66567928 (+) False LOC110527255
XM_021608430.2 mRNA downstream 261794 66550263 ~ 66567928 (+) False LOC110527255
XM_021608439.2 mRNA downstream 261796 66550265 ~ 66567928 (+) False LOC110527255
TU80728 other upstream 365394 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other upstream 365394 65915735 ~ 65922285 (+) True LOC110527164
TU79281 other upstream 1386055 64809589 ~ 64901624 (+) True LOC110526969
TU77508 other upstream 3012383 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 4554291 61729765 ~ 61733388 (+) True G67930
TU81346 other downstream 132026 66420495 ~ 66424081 (+) True LOC118965274
TU81852 other downstream 467738 66756207 ~ 66758984 (+) True G74067
TU81938 other downstream 495866 66784335 ~ 66784969 (+) True G74139
TU83729 other downstream 2086036 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 4283196 70571665 ~ 70654961 (+) True G78121

Expression Profile