RNA id: XM_021608439.2


Basic Information

Item Value
RNA id XM_021608439.2
length 2956
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110527255
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66550263 ~ 66567928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCATGCTTGCTTTCACTTTCAATGTTTTGATTTGATAATGTCAGTTGATGACAACAAACACGCGACTATTGCATATTGAAACGGAGACATTACCATTTAAGGAAGAAACGACGAGTCACCTTTAGGATATTCTTTACGATAATATGCAAGAAATGCTGGAACCACAGCCGTGTAAATGTGAGGACCATGAAGATGGAGACAGATGTATTTAACCCTTCCCACACTGCAGAGCTCCAGTTCCTCAGGTCACGGGTTCGGGAACTGGAGAAAGAGAAGGCCGAAATGGCGGCTGAAAACCAATGGCTGCAAAACATGCTAGTAAAGGAGATCCCTGACCTGCTTTCTACCATGTGGCAGAACTTGGGCCAAGCCAACCACCCCCTCCACCCTGCAGTGTCCCCACAGGCTGTCTCCACAGCAATAGTGAGGGGCGAGagctacacatacacacaccactctGTGTCAGGACAATCTGGCCGACGGTTCAGTCCCCCACTTCATCATCAGCCCATGTCCAACCGCTCAGCTATGACTCAGGACGACGTGAATGGAAGCATGTCAAACTTTGGACCCGAGATGGCCATCAGTGAGCACAGTGTGGACGGAGACTTAGAGCTgagtgacatcacagaggacGACAACCCTCACAGCTCTCTGTTTGGCTCAGCAGCCGACCTACCCGGGATGAGGACATGCTCAGAGACACACTGTGTTAGTGGGACTGGCCATGTAAACCAGGTGGAGGTATACCCAAGTTCCGGCGTCTTCTGTGAAATGCGGTCTTGGCATGCAGCCAATCAGACGCAGTCTCCCACGGCGATGGCGCGCACTCTGTTGCTGGGCGTGTTCGACATGGACACCCTGCTGAACAGCAACCTGCGAGGGGGGCGGAGCCGCAGACCAACCTTCCCCAACCACCGCACCGCCCTGGACCCACACAAGCTCAACGCCATCTACAATGCCACTCTAGCCCGCTTCCCATTGGCCAGGAAGGGACAAATTGGCACCGGCATCAACTCCAAGCTGTCTGAGATCCGGTTCCGATCCAGGAGAGCCAACCGGGACCCCAGTTATCTATGAAGGACTGTTCCTGCCCACACACCCAGTTGTATCAAATCAACATTTTAGTTCTAGTATATTATCACATTAACCGTTCAACTGTATCAGTATATGACTACATGTGCGTGCAGAATGTCTGGCCTATGAATGGTAAAAGGACTCAAAAGATGGGCTAATGCTAGAGGAAGGATTCAAAGCCAGTGGAACAACGCACATAAGAACTGGCTTTGATGGTTAAATTCCCACTCTGTCGCCGACCAATCATTCGTAAACCACACATGTGAACGGTCCCTGGGGTAGTCTCTCTGACTGACCGAGATGCATAGATCCAGGACGGCTGATCCATGTGTGACCAACCAGTGGAGGACGGGAGGCTTCAGTCATGTCTTACCAGACAGACGCCTCTCTGTCGTTGACCTCTACCCACTTAGACAAAGGAGGCAAGAGGGGATTGGAGGGAGGCCAAACTATATTTCTCCATTGATTTCTCTGATCCTAGGCATTAAGCTCACTCCTAAAGCTCCATTACCAGCCCCAGGTCCCCTCTGCACCCTCTCCTTCCAATCCTCTCCTTCCGCCTGAGAGGAGAATCAATTTGTGGCCCCCACCCACCCAGCCTTCCCCAGAGGTGTCACAGCTCCCCATGCCTAATGGACCCACAGGTACTCTGAGCCTCCAGCAGGATGACAGAAGAAATTCATTCATCTTAAAGGAATCTAAACAGTGTGTCATTCTCGCCCAAGTTCACCATGTCCACAGAGCCCACATGAAGAGAACAAGACTGGGGATTTGGCCTGATGCATATATGAAGTATTGGATTAGATGTAACCGTTGGTAATGAGGAACGGTCAAGTTGTTATTTTATATCCGGTCGTGTCTGATGTTCAAGATGTTGAATGTTTGATGCGACTGCATTAAAAGACTGCTGTTTTTCATTGCCcttcatgttgtctctctctagtcatcgCAAACGATTTGAGAAATGACACATTAACCAATTGCTTAACAGCTACTTAGTTTTCGgcaaatgagaaagagagaggagaagatgatAGGCAATGCATCACTAGCCCATTGGTAAATGGAAATATCCATTACAGTAGTCCACCTACTGAGCATACCACTTCATTTCAACGTGAAGAATTGGGTATTATTTGGTTGATACGTTGATCAACGAGATTACAACCTATTTTCAACCATTCAAAAAGACTATGCATTCAACCATCTTGCATTCAACCATcttaaagcacaaccaaattcgaATGGAAAACCAACGTCTattttttggtttagttgtcacctaAATGTGTTATCGctgtgctttcaaccatttaaaagcacaacaaagttcaaatggaAATGCAGTgtcatattttgtttatttatacaacaacttaatgtgttatcactgtgcttcattgaatagcacaaccaaatgacaCGGAATGCAATTGAGATTATTGAAGTACACGGTGTGCAGAATGCAGTGGCTATACAGTAACGCTATACATGACTCAGGGTTTCCGCTTCACAGCGGTCTTGACAGACAATCTCTGTGAACTTGAGCACCGCGCAGAAGTTGCCCTTATCCCTACTGCTAATTTGGCTACTTTtgcacatttttttgttgtctgaatgagggaaatgctgtaaattacgAGGACCtgttgtacactgagtatacaaaacaggaactcctgctctttccatgacatacccTAATCAGGTGAGTCCAGGTGGAAGTATGATCCCTTAATGATATCACCTGTTAaatggggaggagacgggttaaagaaggatttgtaatgcttgagacaattgagacatggattgtgtgtgtgtgtgccattcagaggggtgaatgggcaagacaaaagattgaagtgcctttgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81399 lncRNA upstream 56586 66493139 ~ 66493679 (+) True G73640
TU81267 lncRNA upstream 92695 66361209 ~ 66457570 (+) True G73528
TU81306 lncRNA upstream 178647 66370244 ~ 66371618 (+) True G73552
TU81284 lncRNA upstream 209495 66336748 ~ 66340770 (+) True G73536
TU81290 lncRNA upstream 212977 66336623 ~ 66337288 (+) True G73537
TU81369 lncRNA downstream 717 66568645 ~ 66569036 (+) True G73610
TU81429 lncRNA downstream 4144 66572072 ~ 66572483 (+) True G73668
TU81430 lncRNA downstream 4825 66572753 ~ 66572964 (+) True G73669
TU81431 lncRNA downstream 5203 66573131 ~ 66573376 (+) True G73670
TU81435 lncRNA downstream 9914 66577842 ~ 66578048 (+) True G73674
XR_005052559.1 mRNA upstream 127378 66417495 ~ 66422887 (+) False LOC118965274
XM_021599594.2 mRNA upstream 194371 66351411 ~ 66355894 (+) True prph2b
NM_001124310.1 mRNA upstream 531227 66014185 ~ 66019038 (+) False wu:fj16a03
XM_021608317.2 mRNA upstream 546925 66000257 ~ 66003340 (+) True LOC110527177
XM_036989801.1 mRNA upstream 550417 65993868 ~ 65999848 (+) True LOC110532572
XM_036983106.1 mRNA downstream 70997 66638925 ~ 66734652 (+) False LOC110527278
XM_021608459.2 mRNA downstream 70999 66638927 ~ 66734652 (+) False LOC110527278
XR_005052560.1 mRNA downstream 70999 66638927 ~ 66734652 (+) False LOC110527278
XM_021608546.2 mRNA downstream 206940 66774868 ~ 66783655 (+) True yipf3
XM_021608559.2 mRNA downstream 225492 66793420 ~ 66802542 (+) True lrrc73
TU81346 other upstream 126184 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 261796 66287679 ~ 66288469 (+) True G73515
TU80728 other upstream 627980 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other upstream 627980 65915735 ~ 65922285 (+) True LOC110527164
TU79281 other upstream 1648641 64809589 ~ 64901624 (+) True LOC110526969
TU81852 other downstream 188279 66756207 ~ 66758984 (+) True G74067
TU81938 other downstream 216407 66784335 ~ 66784969 (+) True G74139
TU83729 other downstream 1806577 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 4003737 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 4468542 71036470 ~ 71076102 (+) True ccdc85a

Expression Profile