RNA id: XM_036989801.1


Basic Information

Item Value
RNA id XM_036989801.1
length 1188
RNA type mRNA
GC content 0.55
exon number 5
gene id LOC110532572
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65993868 ~ 65999848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTCCAGCAGCGACCTACAGCAGCTCTGGAGGACGAGCTCAGCTGTCCCATCTGCTTTGAATTTTTCCAGGACCCCGTGAGTCTGAAATGCCAACACAGCTTCTGCCGCGGCTGCCTGGAAACACCAGCATGGATACAACAAAAGCAGCGCGAATGCCCCGTCTGCAGGCGAAGGCCTTCCATGGCCGATTTCCATCCCTCCGTGTCCAACATGAAACTGAGGAACATAGTGGAGGCCTAcctgcagagagaggagaatgaggggaatgagGGGAGAGCAGTGTGTCTTGTGCTGTGTTCCATACAGAACAAGAAGCTCAGGTTTTTCTGTAAGGAGTGTGAGGAACTtgtttgtgctgtgtgtgtggagacCGAGCTGCATGCCAAACATAAGCGCCTGTCAAGGGAACTCACGGCACTGCTCTACAACCTTCCAGAGAAACTGGAACTGGCCACCCAGGCCCAGACCACAACAGGACAGATCAAGAGTGAGTTTGCGAAGCTCAGCCAGTTCCTGAGAGCGGAGGAGGAGGCCAGACTGGAAGCTCTGGAACAGGAGGAGAGCAAGAAGACCGGGTTACTGACTGAGAGGATCAACCGCCTCACCTGTACACTGCAGGATCCAGAGCCTTTATCAGGGACACTGATAGACGTGGCCCAACACCTGGGCAACCTGAGGTTCAAGGTGAGTGACAGACGGGTGTCCCAGCCTGTGCCTGATAACGCTGAGCGATTCGACAGCTCAGTGAGCGTGCTAAGCTCTGTGGAATTCTGCTCAGGCATTCACAGCTGGGAGGTGGCAGTGGAGCCTAAGAATGCCTGGACTCTGGGCGTGGCCAAAGAGGGTGTAGCCCGGAAAGGCAATGTGATGGTCAGCCCAGAGGTCGGGATCTGGGCGATGGGGATGTGGAACGGGGAGCAGTATAGCGCTGGAACTGCCCCCCTGGGTACCCCGTTGGTTCTGAAGAGGAAGCTCATGAGGATCATGGTCAAGCTGGACTATGAGAAAGGAGAGCTCTCTGTCTATGACTCCAGTGACATGTCACTCATCTATACGTTTGAACACAGGTTCACAGAGAGACTGTTCCCTtacttctctccctgtctcaacTCTGATGGCACTAACTCTGGAGTGCTGAGGATCTGCCCTGAGAAGGTGTCTGTGACTGTGGCACCTATTCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81050 lncRNA upstream 11976 65981669 ~ 65981892 (+) True G73321
TU80653 lncRNA upstream 162260 65831379 ~ 65831608 (+) True G72960
TU80643 lncRNA upstream 187583 65805959 ~ 65806285 (+) True G72954
TU80630 lncRNA upstream 194377 65796616 ~ 65799491 (+) False LOC110527123
TU81063 lncRNA downstream 6185 66006033 ~ 66006238 (+) True G73334
TU81040 lncRNA downstream 13029 66012877 ~ 66013340 (+) True G73311
TU81037 lncRNA downstream 14233 66014081 ~ 66019044 (+) True wu:fj16a03
TU81225 lncRNA downstream 253273 66253121 ~ 66253342 (+) True G73488
TU81229 lncRNA downstream 256246 66256094 ~ 66256316 (+) True G73492
XM_021608309.2 mRNA upstream 71583 65915581 ~ 65922285 (+) False LOC110527164
XM_021608300.2 mRNA upstream 82333 65898427 ~ 65911535 (+) True LOC110527154
XM_021608290.2 mRNA upstream 165125 65826347 ~ 65828743 (+) True hcar1-3
XR_005052545.1 mRNA upstream 194466 65794987 ~ 65799402 (+) False LOC110527123
XR_005052546.1 mRNA upstream 194466 65795000 ~ 65799402 (+) False LOC110527123
XM_021608317.2 mRNA downstream 409 66000257 ~ 66003340 (+) True LOC110527177
NM_001124310.1 mRNA downstream 14337 66014185 ~ 66019038 (+) False wu:fj16a03
XM_021599594.2 mRNA downstream 351563 66351411 ~ 66355894 (+) True prph2b
XR_005052559.1 mRNA downstream 417647 66417495 ~ 66422887 (+) False LOC118965274
XM_021608422.2 mRNA downstream 550415 66550263 ~ 66567928 (+) False LOC110527255
TU80728 other upstream 71583 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other upstream 71583 65915735 ~ 65922285 (+) True LOC110527164
TU79281 other upstream 1092244 64809589 ~ 64901624 (+) True LOC110526969
TU77508 other upstream 2718572 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 4260480 61729765 ~ 61733388 (+) True G67930
TU81252 other downstream 287831 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 420647 66420495 ~ 66424081 (+) True LOC118965274
TU81852 other downstream 756359 66756207 ~ 66758984 (+) True G74067
TU81938 other downstream 784487 66784335 ~ 66784969 (+) True G74139
TU83729 other downstream 2374657 68374505 ~ 68374929 (+) True G75747

Expression Profile