RNA id: TU81229


Basic Information

Item Value
RNA id TU81229
length 223
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G73492
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66256094 ~ 66256316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccagatctgtgcctcgacacaatcctgtctcggagctctacggacaattcctttgacctcgtggcttggtttttgctctgacatgcactgtcaactgtgggaccttatatagacaggtgtgtgtttttccaaatcatgtccaatcaataggaTTTACCATTGGTGGAATTCAATCAAGGTGTAgaatttcaaggatgatcaagggaAACATGGTGcctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81225 lncRNA upstream 2752 66253121 ~ 66253342 (+) True G73488
TU81037 lncRNA upstream 237050 66014081 ~ 66019044 (+) True wu:fj16a03
TU81040 lncRNA upstream 242754 66012877 ~ 66013340 (+) True G73311
TU81063 lncRNA upstream 249856 66006033 ~ 66006238 (+) True G73334
TU81050 lncRNA upstream 274202 65981669 ~ 65981892 (+) True G73321
TU81233 lncRNA downstream 4778 66261094 ~ 66261593 (+) True G73496
TU81238 lncRNA downstream 12269 66268585 ~ 66268984 (+) True G73501
TU81264 lncRNA downstream 55150 66311466 ~ 66347388 (+) True G73526
TU81279 lncRNA downstream 78979 66335295 ~ 66340770 (+) False G73536
TU81282 lncRNA downstream 78979 66335295 ~ 66342335 (+) False G73536
NM_001124310.1 mRNA upstream 237056 66014185 ~ 66019038 (+) False wu:fj16a03
XM_021608317.2 mRNA upstream 252754 66000257 ~ 66003340 (+) True LOC110527177
XM_036989801.1 mRNA upstream 256246 65993868 ~ 65999848 (+) True LOC110532572
XM_021608309.2 mRNA upstream 333809 65915581 ~ 65922285 (+) False LOC110527164
XM_021608300.2 mRNA upstream 344559 65898427 ~ 65911535 (+) True LOC110527154
XM_021599594.2 mRNA downstream 95095 66351411 ~ 66355894 (+) True prph2b
XR_005052559.1 mRNA downstream 161179 66417495 ~ 66422887 (+) False LOC118965274
XM_021608422.2 mRNA downstream 293947 66550263 ~ 66567928 (+) False LOC110527255
XM_021608430.2 mRNA downstream 293947 66550263 ~ 66567928 (+) False LOC110527255
XM_021608439.2 mRNA downstream 293949 66550265 ~ 66567928 (+) False LOC110527255
TU80728 other upstream 333809 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other upstream 333809 65915735 ~ 65922285 (+) True LOC110527164
TU79281 other upstream 1354470 64809589 ~ 64901624 (+) True LOC110526969
TU77508 other upstream 2980798 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 4522706 61729765 ~ 61733388 (+) True G67930
TU81252 other downstream 31363 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 164179 66420495 ~ 66424081 (+) True LOC118965274
TU81852 other downstream 499891 66756207 ~ 66758984 (+) True G74067
TU81938 other downstream 528019 66784335 ~ 66784969 (+) True G74139
TU83729 other downstream 2118189 68374505 ~ 68374929 (+) True G75747

Expression Profile