LOC110532572 (LOC106576752)


Basic Information

Item Value
gene id LOC110532572
gene name LOC106576752
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65993868 ~ 65999848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989801.1
ATGCTCCAGCAGCGACCTACAGCAGCTCTGGAGGACGAGCTCAGCTGTCCCATCTGCTTTGAATTTTTCCAGGACCCCGTGAGTCTGAAATGCCAACACAGCTTCTGCCGCGGCTGCCTGGAAACACCAGCATGGATACAACAAAAGCAGCGCGAATGCCCCGTCTGCAGGCGAAGGCCTTCCATGGCCGATTTCCATCCCTCCGTGTCCAACATGAAACTGAGGAACATAGTGGAGGCCTAcctgcagagagaggagaatgaggggaatgagGGGAGAGCAGTGTGTCTTGTGCTGTGTTCCATACAGAACAAGAAGCTCAGGTTTTTCTGTAAGGAGTGTGAGGAACTtgtttgtgctgtgtgtgtggagacCGAGCTGCATGCCAAACATAAGCGCCTGTCAAGGGAACTCACGGCACTGCTCTACAACCTTCCAGAGAAACTGGAACTGGCCACCCAGGCCCAGACCACAACAGGACAGATCAAGAGTGAGTTTGCGAAGCTCAGCCAGTTCCTGAGAGCGGAGGAGGAGGCCAGACTGGAAGCTCTGGAACAGGAGGAGAGCAAGAAGACCGGGTTACTGACTGAGAGGATCAACCGCCTCACCTGTACACTGCAGGATCCAGAGCCTTTATCAGGGACACTGATAGACGTGGCCCAACACCTGGGCAACCTGAGGTTCAAGGTGAGTGACAGACGGGTGTCCCAGCCTGTGCCTGATAACGCTGAGCGATTCGACAGCTCAGTGAGCGTGCTAAGCTCTGTGGAATTCTGCTCAGGCATTCACAGCTGGGAGGTGGCAGTGGAGCCTAAGAATGCCTGGACTCTGGGCGTGGCCAAAGAGGGTGTAGCCCGGAAAGGCAATGTGATGGTCAGCCCAGAGGTCGGGATCTGGGCGATGGGGATGTGGAACGGGGAGCAGTATAGCGCTGGAACTGCCCCCCTGGGTACCCCGTTGGTTCTGAAGAGGAAGCTCATGAGGATCATGGTCAAGCTGGACTATGAGAAAGGAGAGCTCTCTGTCTATGACTCCAGTGACATGTCACTCATCTATACGTTTGAACACAGGTTCACAGAGAGACTGTTCCCTtacttctctccctgtctcaacTCTGATGGCACTAACTCTGGAGTGCTGAGGATCTGCCCTGAGAAGGTGTCTGTGACTGTGGCACCTATTCACTGA

Function

NR:

description
E3 ubiquitin-protein ligase TRIM21-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989801.1 True 1188 mRNA 0.55 5 65993868 65999848

Neighbor

gene id symbol gene type direction distance location
LOC110527164 LOC106576754 coding upstream 71583 65915581 ~ 65922285 (+)
LOC110527154 LOC106576753 coding upstream 82333 65898427 ~ 65911535 (+)
hcar1-3 LOC106576755 coding upstream 165125 65826347 ~ 65828743 (+)
LOC110527123 NA coding upstream 194466 65794987 ~ 65799491 (+)
LOC110527114 LOC106576759 coding upstream 296540 65680024 ~ 65697328 (+)
LOC110527177 LOC106576750 coding downstream 409 66000257 ~ 66003340 (+)
wu:fj16a03 LOC100135970 coding downstream 14337 66014081 ~ 66019044 (+)
prph2b LOC106576743 coding downstream 351563 66351411 ~ 66355894 (+)
LOC118965274 LOC106576739 coding downstream 417647 66417495 ~ 66424081 (+)
LOC110527255 LOC106576738 coding downstream 550415 66550263 ~ 66567928 (+)
G73321 NA non-coding upstream 11976 65981669 ~ 65981892 (+)
G72960 NA non-coding upstream 162260 65831379 ~ 65831608 (+)
G72954 NA non-coding upstream 187583 65805959 ~ 65806285 (+)
G72858 LOC100136012 non-coding upstream 258004 65686749 ~ 65735864 (+)
G73334 NA non-coding downstream 6185 66006033 ~ 66006238 (+)
G73311 LOC106576750 non-coding downstream 13029 66012877 ~ 66013340 (+)
G73488 NA non-coding downstream 253273 66253121 ~ 66253342 (+)
G73492 NA non-coding downstream 256246 66256094 ~ 66256316 (+)
LOC110526969 stk32c other upstream 1092244 64809255 ~ 64946164 (+)
G70011 NA other upstream 2718572 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 4260480 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 4678616 61314874 ~ 61315252 (+)
G73515 NA other downstream 287831 66287679 ~ 66288469 (+)
G74067 LOC106576735 other downstream 756359 66756207 ~ 66758984 (+)
G74139 NA other downstream 784487 66784335 ~ 66784969 (+)
G75747 NA other downstream 2374657 68374505 ~ 68374929 (+)

Expression


Co-expression Network