LOC110527114 (LOC106576759)


Basic Information

Item Value
gene id LOC110527114
gene name LOC106576759
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65680024 ~ 65697328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608274.2
tctctttcactctctctctcttctccctatcaATTGCTCACAATCcccgcccctctcctctccctctttctgttggTCTGATAGTGTCTGTGCCTTaaatgcaaaatacatttaaaatctaTGTATTAGGCGACAGATGTCTTGTTCATTATAGAAAATCTATATCTACCAGGATTAAGCACCTCATTCTGTAGAACACCAACTTGGGAGTGAGAAGGAACTTGATGGTGATGAATGGTTGACTGGTTATTGTGGCAGTTGGCACCATGCGTTATAGTATATATCTGGTTCTATTCATTCTGGTATGCTCTACTTCTCTGCTGTATGTCACACTCTTAAGGAGATACTACCACAAAAGgagtgGTGGGTTTGACCACTATGCAGCTTTTCTCTGTAACAGACTGAGACTCAAGTTCCTCACTCTCACTTCAGCCAAGGCTATCAACATGAGTACTCTAATAATGGACGTTAGACAGTTGATGAACTGCCCTCACAGACCCAACATCACCCAGAGAGAACTCTACAGGGTGATCTTACGTTCCTGTTGTAATGCTACAGGTGAGATGATCCTGACCAATCAGAACACTAAGTCTGGCCAAAAGATCCACTATGAGACCAACCAAAAGCTATTTAAAACGGTCGACAAGAAACTACACAGCATGCTGCCAAAAGACTTACCTTGGAGTAATGGTTTGTTGGGTCATTGTGCCGTGGTGGGAAGTGGAGGAATCCTGCAGAACAACAGCTGTGGAGCAGAGATAGACCGTGCTGATTACATCATCAGgtTTAACCTGGGTCCGGTCACCAACAGTAAGGATGTAGGGAACAAAACCCACCTGATGACCATCAACCCCAGTCAGatcagaagTTACCGCAACCTGACGAAGGCCCCTCTACCGTTGGCCAATCGTGTCGCAGCTTATGGGAACGCCTCCCTGCTCCTGCCGGCATTCAGCTACACAATCTGTACTAAACTGTCATTGGATGTTTACCACGCCCTTCGACCGCTGAGGCCCAATCAGAAGGTGGTATTCTTCAACCCCAATTTCATGCTTAATCTGGGCAGGAAGTGGAAAGGGCAGGGTTTAAAAGAGCGACGCCTCAGCACCGGGCTGATGCTGGCTAGTGTGGCCATGGAACTCTGCAAAGAGgttCATATTTACGGTTTCTGGCCCTTCTCTCTGGATCTAAACCACAATCCTTTGCCCCATCATTACTATGACAACGTTGGCCCTAATAAAGGCGTCCACTCCATGCCTGATGAGTTCCTACTGCTACTGAAGCTACACACACAGGGAGTGCTGCAACTACACCTGGGACGCTGCTGAACACATACATACTCAAACactcatgcacacatacacacacacactccatctttattgttgtgttttatgttgattttaaaaaaaataaacatttttataa

Function

NR:

description
alpha-2,8-sialyltransferase 8F-like

GO:

id name namespace
GO:0043412 macromolecule modification biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608274.2 True 1428 mRNA 0.46 7 65680024 65697328

Neighbor

gene id symbol gene type direction distance location
LOC110527092 tisd coding upstream 197799 65478933 ~ 65482225 (+)
thada LOC106576760 coding upstream 203509 65372299 ~ 65476515 (+)
LOC110527082 epcam coding upstream 383920 65291708 ~ 65296104 (+)
LOC110527046 LOC106576764 coding upstream 458337 65173289 ~ 65221687 (+)
prop1 LOC100192335 coding upstream 512147 65161658 ~ 65167877 (+)
LOC110527123 NA coding downstream 97659 65794987 ~ 65799491 (+)
hcar1-3 LOC106576755 coding downstream 129019 65826347 ~ 65828743 (+)
LOC110527154 LOC106576753 coding downstream 201099 65898427 ~ 65911535 (+)
LOC110527164 LOC106576754 coding downstream 218253 65915581 ~ 65922285 (+)
LOC110532572 LOC106576752 coding downstream 296540 65993868 ~ 65999848 (+)
G72866 NA non-coding upstream 17722 65657325 ~ 65662302 (+)
G72812 NA non-coding upstream 116569 65563113 ~ 65563455 (+)
G72047 NA non-coding upstream 235351 65406430 ~ 65444673 (+)
G71997 plekhh2 non-coding upstream 351512 65327593 ~ 65328512 (+)
G71935 NA non-coding upstream 423549 65194818 ~ 65256475 (+)
G72954 NA non-coding downstream 108631 65805959 ~ 65806285 (+)
G72960 NA non-coding downstream 134051 65831379 ~ 65831608 (+)
G73321 NA non-coding downstream 284341 65981669 ~ 65981892 (+)
G73334 NA non-coding downstream 308705 66006033 ~ 66006238 (+)
LOC110526969 stk32c other upstream 778400 64809255 ~ 64946164 (+)
G70011 NA other upstream 2404728 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 3946636 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 4364772 61314874 ~ 61315252 (+)
G66188 NA other upstream 5737960 59941486 ~ 59942064 (+)
G73515 NA other downstream 590351 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 723167 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 1058879 66756207 ~ 66758984 (+)
G74139 NA other downstream 1087007 66784335 ~ 66784969 (+)

Expression


Co-expression Network