LOC110527082 (epcam)


Basic Information

Item Value
gene id LOC110527082
gene name epcam
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65291708 ~ 65296104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608241.2
AGCTGACGTCATGAGACTGACCTTTCTTATAAATCAAGCGATTCTTAACTACAGCATCATATAGCAATAGACGTTACAACGTTGTTCCAGAAAGCGTTGAAACAGGTGTAGCAGACATACCGTTGCTCGTTTGGTGAACTAGGAATCATTGGAGTGTGTAAACTGGTTGAACGAGCGGTAGCTGTGAGGAAGAGAGTACGCTTGTGTCGTTCAGGTGTTTACTCCATTTTTTTTCTCGGTTTTTCTCAAATTCAACTATGAAGATTTGGATTGCACTTCTTCTTGCGACTTTCGCAGTGGGTGCATCAGCTCAATGCACATGTGAGAGTTTCAAGTGGGCTACATGTGATGGCACCCCTTGTCAGTGTGGCGTTATGGTGGGAACTGGTGAAATGCAGAACCTGAACTGCTCTAACTTGGTCCCCAAATGCTTCCTGATGAAGGCAGAGATGTACCGTGCTAGGAAAGGCCTGTCCACTCGTACCGGAGGAAAGCCAGACAAGACCGCCTTTGTGGACAACGATGGCATCTACGACCCAGACTGTGAGACCACTGGTGCTTTCCGGGCCAAGCAGTGCAATAACACTAAGGAGTGTTGGTGTGTCAACAGTGCTGGCGTGCGCAGAACCGACAAGGGAGACGAGAGCCTTCGGTGTGAGAAGTTGGTGGAGACCTATTGGGTTCGCCTGGAGCTCAAGCACAAGCCAGTGAACAACGCTGTGGATGCTGCCAAGTTGCAGGCTGCCATAGCAACTGCCATCCAGAACCGTTACAGCTTTGACAAGACCTTTGTGAAGGAGGTGGAGTACGACCCTGAGGCTCGCCTGATCGTTGTCGATGTCAAGAAGGAGAAGGGAGACCGCAAGGCCGACCTGTCTCGTATGGCTTACTACATGGAGAAAGACGTTAAGGTGCTGCCACTGTTCAAGGACCAGGCTAAGTTTGAACCCAGTGTGGACGGTCAGAAGCTGGAGATGGAGGATATCTTGGTGTACTATGTAGACGAGGAGGGCCCCACCTTCACCATGAAGAGGCTGACCGGGGGAGTTATCGCCGTCATCGTGGTGGTCATCCTGGCCGTGGCCGCCGGACTGCTGGTCCTCTACCTTGCGAGGAGGCGAGAGCGGGGGTACAGCAAAGCAGAGCCCAGAGAGATGGAGGCCATGTAGACAAAAATTAACCACAGAGCTGGTTCTACGCTGAAATATTAACACCTTGTATAGTGCCTTTTATATAACATTCTGTTTGCAATTGTGTTTAATATTGTTACTTGAGGGATGCCGTTTTGGAAAGGATTGGTCAAATCTATTTAGCACTATTACTACTTCCCAGCATTTTTATTTATGAGCTGTTGCTTTAACCGTGTAACCTTTTGATTTAAATGAAGATGTTTGAATGCTGTAGATCCCGCAAACTTGACTCTGGACATAAACGCCAGTTTCACTTCAATAATAAAATGTTCCACACTAGTCAGGGACTTATTTAGATCTGGGGCACCAGGTAGGTGCAATTTTagtatcaggtagaacagaaccgGCAGGTTGTACGGTTTCATATGAACTTtgtgtttttgattttttttaataaaGTGTGGATTTTAAAATg

Function

symbol description
epcam Acts upstream of or within several processes, including epiboly involved in gastrulation with mouth forming second; liver development; and posterior lateral line neuromast primordium migration. Located in basolateral plasma membrane and perinuclear region of cytoplasm. Is expressed in several structures, including digestive system; integument; pectoral fin bud; pronephros; and sensory system. Human ortholog(s) of this gene implicated in congenital diarrhea 5 with tufting enteropathy and hereditary nonpolyposis colorectal cancer type 8. Orthologous to human EPCAM (epithelial cell adhesion molecule).

NR:

description
epithelial cell adhesion molecule

GO: NA

KEGG:

id description
K17288 TACSTD2; tumor-associated calcium signal transducer 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608241.2 True 1605 mRNA 0.47 7 65291708 65296104

Neighbor

gene id symbol gene type direction distance location
LOC110527046 LOC106576764 coding upstream 70021 65173289 ~ 65221687 (+)
prop1 LOC100192335 coding upstream 123831 65161658 ~ 65167877 (+)
LOC110527013 socs5 coding upstream 170777 65068088 ~ 65120931 (+)
LOC110527002 rhoq coding upstream 250098 65021203 ~ 65041610 (+)
LOC110532561 LOC106576767 coding upstream 275023 64993070 ~ 65016685 (+)
thada LOC106576760 coding downstream 76195 65372299 ~ 65476515 (+)
LOC110527092 tisd coding downstream 182829 65478933 ~ 65482225 (+)
LOC110527114 LOC106576759 coding downstream 383920 65680024 ~ 65697328 (+)
LOC110527123 NA coding downstream 498883 65794987 ~ 65799491 (+)
hcar1-3 LOC106576755 coding downstream 530243 65826347 ~ 65828743 (+)
G71935 NA non-coding upstream 35233 65194818 ~ 65256475 (+)
G71945 NA non-coding upstream 60305 65230164 ~ 65231403 (+)
G71826 NA non-coding upstream 254127 65004285 ~ 65037581 (+)
G71654 NA non-coding upstream 299804 64987228 ~ 64991904 (+)
G71997 plekhh2 non-coding downstream 31489 65327593 ~ 65328512 (+)
G72047 NA non-coding downstream 110326 65406430 ~ 65444673 (+)
G72812 NA non-coding downstream 267009 65563113 ~ 65563455 (+)
G72866 NA non-coding downstream 361221 65657325 ~ 65662302 (+)
G72858 LOC100136012 non-coding downstream 390645 65686749 ~ 65735864 (+)
LOC110526969 stk32c other upstream 390084 64809255 ~ 64946164 (+)
G70011 NA other upstream 2016412 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 3558320 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 3976456 61314874 ~ 61315252 (+)
G66188 NA other upstream 5349644 59941486 ~ 59942064 (+)
LOC110527164 LOC106576754 other downstream 619631 65915581 ~ 65922285 (+)
G73515 NA other downstream 991575 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 1124391 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 1460103 66756207 ~ 66758984 (+)
G74139 NA other downstream 1488231 66784335 ~ 66784969 (+)

Expression


Co-expression Network