hcar1-3 (LOC106576755)


Basic Information

Item Value
gene id hcar1-3
gene name LOC106576755
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65826347 ~ 65828743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608290.2
gatgggtgagaaaacaaattgattgaatccattttgaattcagactgtaaaacaacaaaatgtggaataagtcaaggggtgtgaatactttctgaaggcactgtatatgcagacATGGCTGAACCAGATGACACTCAAATTAGGGTTTGGTTGTGATTGCAAACTCCCTGAATTAGCTCAGAGATCACACTTGTGATGTCATGTTGGCTCTGGCAAGCCCTCAGAGGAAGTCAGTCTTAAAGTGTATGTCAAGACGCctctctaaaaaaaaaaacagaaaatccgGAACAGTGGAAACACACAAGAGAGGAGATCTGTTGAGGACATTCAAAGTCATCTACAGGATTCTAAACTGCTCTTCAACCCCAAATGCAGTCATTGACCCCAAACGCTCAACTGATATCCTCTGAGATGCTCTGAAAAGAGGAAGAAAAAGAGGCAGATTGTGTGAAAAACACCAACATTGAGGTTTCCTGGAAGCAAAAACATACTCAATCTAACGATGGTTGATGAAGCAACAGTAGTGCACAGTAACTCTACCGGAAGACTGAACCAGCCCTTCCACTGCCTGGCCACTCAGAATCTGGTGGCTGACATACTGCCTCCTGTCCTGATTATAGAGCTCCTAGTGGGCTTGCCAGGCAACGTAATGGCCCTGTGGATCTTCACCTGCCGTCTGAAGACTTGGAGGGCCAACACCCTGTTCCTCTTTAACTTGGTCCTGGCTGACTTCCTACTGCTCATCTGCCTGCCCTTCCGCATTGACAACCTGTTCCGTGGGGAACACTGGGTGTTTGGCGAAGCCTGGTGCCGGATCAACCTCTTCATGCTCGCTGTCAACCGCTCGGCTAGCATCGCGTTCATGACTACCGTGGCCTTCGACCGCTACTTCAAGGTGGTCCACCCACACCACCGTGTCAACCACATGACATCTACCCAGGCAGGATGGGTGGCGGGGGGCATCTGGGCAGTGGTGATCTCCTTGCGGCTCCCCCTGCTGACCACCAACCTCCTCGGGCAGGATGGCAACATGTCCCTGTGTCGCAGCTTCAGCTCCTACACTGTGACTCCCCTGGCAATCAAGATACACAACATGGTGTTCGTCGGAGAGTTCTTCCTGCCCCTGCTGCTCTTGTTCTTCTGCTCAGCCAGGATTGCCTGCATCTTACGCCAACGGCAACTGGACAAGGAGCAGAAGGTTCGGCGGGCCATCCGGGTGGTTGGGCTGATCGTGGCTGTGTTTGTGCTGTGTTTCTTTCCCGGCATCGCCACAGGCCTGAGTACGGTCTATATCAAGAAGGTCAGACCCAGGGACTGTGTGTCTTACAACATGGCTGCGCAGCTCTTCAGCCTGTCCATTGGATTTACCTACCTTAACAGTGCTCTGGACCCAGTCATCTACTGTTTTTCCAGTTCCATGTTCCGAAACTCCCTCAAGAGCTCCATCAATAAGCTGGGCCTGGTGGAGATGAGGCTGAGTCGACGGGGAAGCATGACCAGCGATGGGTGAAGAGCGAggcctgccttgttcaggggcagaacggcagatttttaccttgtcagctcgaggatccGATCCGATTCTGTAGCTATGTGGGATACATACTTGAAAGGACTgagtacgtgtgtatgtgtgtatatgtatgtgaaaCAAAGACAGGAAAAAGAAAGCCTTCATTCTACTGAATGGTTATTTTTTAGAGCCGAATGATGTAGAGTGACATGTTTTTGTCTTGATTTAGTCATGTCTATCAAATACACCATTTTAACCAGATGTAAGGGATGTTTCAAAATGTACAGAACGGGGACCAGGAGGAGAATGGGGGAGGGACATGCTTTCTATTTCAGTCGAGGAGGATTTAGTATTTTCTAAATcaagtccaggggagggtcatgcaATTTTTAATTGATTACATTTTAATATTTATCAGTGTTTtagaattagttgcttattatgctatacattgccttcagaaagtattcccaccacttgactttttccacattttgtgttaaagcaatttacattttttatgtCACTGggattgttttatttttgttattttttttgtacaaatgaataaaaaacgcaa

Function

NR:

description
hydroxycarboxylic acid receptor 2-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608290.2 True 2093 mRNA 0.47 2 65826347 65828743

Neighbor

gene id symbol gene type direction distance location
LOC110527123 NA coding upstream 26945 65794987 ~ 65799491 (+)
LOC110527114 LOC106576759 coding upstream 129019 65680024 ~ 65697328 (+)
LOC110527092 tisd coding upstream 344122 65478933 ~ 65482225 (+)
thada LOC106576760 coding upstream 349832 65372299 ~ 65476515 (+)
LOC110527082 epcam coding upstream 530243 65291708 ~ 65296104 (+)
LOC110527154 LOC106576753 coding downstream 69684 65898427 ~ 65911535 (+)
LOC110527164 LOC106576754 coding downstream 86838 65915581 ~ 65922285 (+)
LOC110532572 LOC106576752 coding downstream 165125 65993868 ~ 65999848 (+)
LOC110527177 LOC106576750 coding downstream 171514 66000257 ~ 66003340 (+)
wu:fj16a03 LOC100135970 coding downstream 185442 66014081 ~ 66019044 (+)
G72954 NA non-coding upstream 20062 65805959 ~ 65806285 (+)
G72858 LOC100136012 non-coding upstream 90483 65686749 ~ 65735864 (+)
G72866 NA non-coding upstream 164045 65657325 ~ 65662302 (+)
G72812 NA non-coding upstream 262892 65563113 ~ 65563455 (+)
G72960 NA non-coding downstream 2636 65831379 ~ 65831608 (+)
G73321 NA non-coding downstream 152926 65981669 ~ 65981892 (+)
G73334 NA non-coding downstream 177290 66006033 ~ 66006238 (+)
G73311 LOC106576750 non-coding downstream 184134 66012877 ~ 66013340 (+)
LOC110526969 stk32c other upstream 924723 64809255 ~ 64946164 (+)
G70011 NA other upstream 2551051 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 4092959 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 4511095 61314874 ~ 61315252 (+)
G66188 NA other upstream 5884283 59941486 ~ 59942064 (+)
G73515 NA other downstream 458936 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 591752 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 927464 66756207 ~ 66758984 (+)
G74139 NA other downstream 955592 66784335 ~ 66784969 (+)

Expression


Co-expression Network