LOC110527092 (tisd)


Basic Information

Item Value
gene id LOC110527092
gene name tisd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65478933 ~ 65482225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608259.2
AACTCCACCCACGCGAGCCACCGCGAAGCATTTATATCCATGTGCAGAGGGAAAGCAGTTAGTGAAGCAGTCTGGCTCAGCGCTTCTCTAAGGAAGAACCTGCAACACACAAGGAACTTTCACCTACTTGTTGATTCCTCTCCACCGCTGGAATTGCACATTCGTTTTTCCTTCTAACGCTCTAAAAAAAAACAGTCGTGGCACCATTTTACAACCGTTGCCTCGTGCATTGAAGGATCCTGGTCGGTCCTCTATGAGAGCTACTGTAACGTTACTGCGACAGAACTTCCGAAAAAGAGATGTCTGCAACCATCTTGTCCGCTTTCTACGACATCGACATGCTTTACAAGCAAGATATGAACATGAACGCTGTGAATCACATCAATAGCATACTGGACAAGAAAGCGGTGGGGCCTCCAGTGACCACACACAGCTCCAATAGTTCTTTCGCGCCGGGATTTTTCCGTAGAAGCTCGACCACCAACATGGAAGCAATGACCAACAACAGCAACAAGTACTCTGTCAACTCCTACAGTAATTTGATGGAGAACGCAACGAGCAGCAGCACTGCCATTATGAACAAGGAGAACAAGTTCCGCGACCGGACATACAGCGAGAATGGGGACCGCAGCCAGCAGCTGCAGATCGTGCAGCAGAAGCCAGGCTCTCAGATCAACTCCACCCGCTACAAGACCGAACTCTGCAGGCCCTTCGAGGAGAACGGAGCGTGCAAATACGGAGAGAAATGCCAGTTCGCGCACGGCTACCATGAGCTGAGAAATTTGTCTCGTCACCCTAAGTATAAAACCGAGCCCTGTCGCACTTTCCACACTATTGGCTTCTGCCCCTACGGTCCCCGCTGTCATTTTATCCACAACGCGGATGAGCGCAGACCCGCTCCAAGCAACGCCAACGTGCAGGGGGAACCCAAATCGGCTCGCGAGCTCTGTGGCTATGGTCAAAACGGCGACGTGCCGCAGCAAGTTGGGTACAACCGGGACAGACCAAAGCTTCACCACAGCCTGAGTTTTTCAGGATTTTCCAGCCACCACGGACTTGAGTCGCCACTACTCGAGAGCCCTACGTCGCGCACACCACCACCCCCCTCaaactcctcttgctctctcaaCTATTATGAGGACGTACGGTCTCCCAACTCCATGTCTTGTGTGAACAGTGCATTCAGTTTTCCTGGACATGACCTGAAAGCCTTACTTGCTCCCCTGGCCTTGCATACGCAAAACGGCTATGGCAACAACCATTTCAATGGTGCCTACTACGGGAACATTCAAGCCAACATGtgccccccttctcccccctcatACAACATGAGCCACTTGCAGTCCCTGCGCCGCCTGAACGATTCACCGGTGTTCGACTCCCCTCCTAGCCCGCCCGACTCCCTCTCAGACCGGGAGAGCTATGCGAGCGGGTCCCTCAGCTCTTCTGGGAGTCTTAGCGGCTCTGAGTCTCCGAGTTTGGATGCTGGGAAACGTTTGCCAATCTTCAGCAGGCTGTCGATTTCTGATGACTAAACATCCCATGTTATTTTCAATGGATCAAATTTGTCCATGACATGGCATTAGTTGTTTTTCCTTTTTGTAATGAGGGTTGTATAGAATTAGATATCAACAGAAGGCATTCCATCGGTGACTTACACTTTTGCGCTGCAAGTAAGGGCAGTATTTGTCTCAGGCAAGCCACACTTCCCTGGGATAGATGTGTACAAAACTTGACACGAGACTGTAAAGCAGATTCAGATTTCCTCCATCCTGCCAAGAAATGCCTTGACACAATGTACATTTTTTTCTTCTAAGTATGTGTTCCTTTCTGAAAGCTTAAACTTCCATTCCAGAACTTTAATCTTTTTTTCACAGCGCCACGCAGTGGTTTGTTTGAGTAGTATAGTTTGTTGCTTAGTTGAAGCACTCTGAGTTAGGTTTGTTTGGGGAAATCACTGCAGAtggttgaaaatatattttatatatttttttagctgTTTTGAGTGATTACATAGCAGTGCGTAACTGGCTATGAAATATTTAACTTATTTATTACCTTGTGAAAAAGTGTAGGCTATATGTTGGTAATTTGTCCATACTGTATTTATCAAGTATGATGAAGCAATAGATCTATATTCTTTTATGTTTAAATTATGATCGCCATTATTAATCTGCATAAAGTGGAGTGTATGTCCTTTtcacagtaatatatatatattgtttttggtCTCCTTTTGTAACTTCACTTGGTTATTTTTATTGtaaattagtaaaaaaaaaaaaaaatcttaatttaaGAGAACGTATGTGATATTTATTTCCTAAATTTTGTTTACGTTTATTAAAACAAAAGTTTGCGTGATTTGCTGTTCTGAGGTTGCTTGTAAGAGCTGTGGAAGGTGTTTTGAGAATCCTTATCTAGATGTTTCTGTAGAATGTATAAACAATGTGGTTGTGCAGACCGTCCAAACCTGAGCTAGCcttgcatattttttttttctccatagaTCAGACTCGGTGACAAAGAACCCAAGTAAATAaattaaccaaaaaagtattttgtgttcTGTTTATACGAGGTCACACTGTGATTCCAGCCACGCGCTAAAGAATGTAGCAATCCTTTGTGCCCCAGTATTATTGTGTAGTGCCTACAGGGTTCACCATCTGACATGCCTTAATATTAACCAAATAAAGTATTTTTCCTACACATATCTTTTCCACAACTTTAATTGAATGTAGTGTTGGAGCTGAATTACTTTTGAAGGTTGTTACCACTTATCATAAGACCCTGGGACAACGATACTATATTATTCCCCGTTCCTCTACTTTTGATTTTGTTTGATATTGACTAGTTCAGGGGATGCGCACTATGTatttttttgactacttttatcAGAAGTAAAGCTTTTTGAATGTAACTAAAACGGACAAAAAGACAACCTGAGTTGTAATATAATTATTTTTGGAGAGTCAGTTCACTACAAATTGAGTGTGAGACTTTGTACTGTACATTTTCTTTTGTAGTTCTCCCAATAAAATGATTTTGAAAATA

Function

NR:

description
mRNA decay activator protein ZFP36L2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18753 ZFP36L; butyrate response factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608259.2 True 3057 mRNA 0.43 2 65478933 65482225

Neighbor

gene id symbol gene type direction distance location
thada LOC106576760 coding upstream 2418 65372299 ~ 65476515 (+)
LOC110527082 epcam coding upstream 182829 65291708 ~ 65296104 (+)
LOC110527046 LOC106576764 coding upstream 257246 65173289 ~ 65221687 (+)
prop1 LOC100192335 coding upstream 311056 65161658 ~ 65167877 (+)
LOC110527013 socs5 coding upstream 358002 65068088 ~ 65120931 (+)
LOC110527114 LOC106576759 coding downstream 197799 65680024 ~ 65697328 (+)
LOC110527123 NA coding downstream 312762 65794987 ~ 65799491 (+)
hcar1-3 LOC106576755 coding downstream 344122 65826347 ~ 65828743 (+)
LOC110527154 LOC106576753 coding downstream 416202 65898427 ~ 65911535 (+)
LOC110527164 LOC106576754 coding downstream 433356 65915581 ~ 65922285 (+)
G72047 NA non-coding upstream 34260 65406430 ~ 65444673 (+)
G71997 plekhh2 non-coding upstream 150421 65327593 ~ 65328512 (+)
G71935 NA non-coding upstream 222458 65194818 ~ 65256475 (+)
G71945 NA non-coding upstream 247530 65230164 ~ 65231403 (+)
G72812 NA non-coding downstream 80888 65563113 ~ 65563455 (+)
G72866 NA non-coding downstream 175100 65657325 ~ 65662302 (+)
G72858 LOC100136012 non-coding downstream 204524 65686749 ~ 65735864 (+)
G72954 NA non-coding downstream 323734 65805959 ~ 65806285 (+)
LOC110526969 stk32c other upstream 577309 64809255 ~ 64946164 (+)
G70011 NA other upstream 2203637 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 3745545 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 4163681 61314874 ~ 61315252 (+)
G66188 NA other upstream 5536869 59941486 ~ 59942064 (+)
G73515 NA other downstream 805454 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 938270 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 1273982 66756207 ~ 66758984 (+)
G74139 NA other downstream 1302110 66784335 ~ 66784969 (+)

Expression


Co-expression Network