RNA id: TU80728


Basic Information

Item Value
RNA id TU80728
length 1223
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC110527164
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65915581 ~ 65922285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCTCTCTGCATGTTTGGCCAACAAGGGGACATCCGTGATCCGACCTCATTCGtaactgttgtttttgttttgtaaccAAGTAAAATGTACTACAAGTTAAATGGAGTTACACAAAGACTTGCTGGATCGGCACCGAGTGCGTACAGCCCTCAGGGGTTGAGGGTAACAGTGCCCATGGAGGCCCCTCCAATGATCTTTGCCACCCCCACCAAATATGTGTCGGAGGCAGGGAACACAGTGGAGTACCTGGGACACAACAAAGTCCCTGACCTACAGAAACTCTTCCAGAAGTCTGACGGTATCCCTGTGCACCTGAAGAGAGGCCTGATGGACAAGATGCTGTACAGGACCACCATGGGCCTGACCATTGGAGGGACCCTCTACTGCCTGATGGCTCTCTACATAGCTGCCCAGCCAAGGAAGTGATCTGCTTATCCAGCCTCTTCCCCTTCAAGGTTCCAACAGGATTCTATATGATTAGGAGCAATAATGTGGATGATGATTGTGCTCAGACGGTCAAGGAAAGGAATCCCTTTACTCTCAATTATATGTCCCCTTATCTTATTGATATGCCTAGTTTCATGTTGAGGTTTTCATCAGACTCAAATAATCTATACTTTGTCAAATTTAAGTCCATGTCATATCACTACTTGCCCTATCTCACTTGCTCTGTGTTCTTGTGCAAGTTGTGCATTTCCGCATGTATATCTCTGCTGATGTCTCGGTAACAACCAGCACCATATTAGTGGTACATAACTATGATGGCTAGAGTATCaacaatctacatttttaaaaagtctgACCATGTTTTCTGCCAGAGcactcccctgtgtgtgtggaaAGAAGTTGAGGTCTCATGACATGGATGACTTTGGGTGCTCATAACATGGATGACTTTGGGTGCTCTTTTGTTCTGGGCGAGAGGGTGGATGGGGCTAGCACCTTTTTTCAAAGCTAATAATGAGGTGGTACTTCAGGTTGTGTGATATCATTCATTGGTTTCTTTCTGTATTAAACTCTGCTTTTGAGAAGTCACATCTGCATTACCTTATTTGCATGCCCCCCCCAAGTCCCTATTTTTATGGTGCAGAGGTTGTTGTCATTTAGTCTGCATACTAACTGACGGTgttctgtaaaaaaaaagaaagggagTGCACAGAGTATCTGACAAGTCATTGTAATTTTGTCTTGGGATAATAAAAGTAtattttgtttaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80653 lncRNA upstream 84127 65831379 ~ 65831608 (+) True G72960
TU80643 lncRNA upstream 109450 65805959 ~ 65806285 (+) True G72954
TU80629 lncRNA upstream 116244 65795417 ~ 65799491 (+) False LOC110527123
TU80631 lncRNA upstream 116244 65795417 ~ 65799491 (+) False LOC110527123
TU80632 lncRNA upstream 116244 65795417 ~ 65799491 (+) False LOC110527123
TU81050 lncRNA downstream 59384 65981669 ~ 65981892 (+) True G73321
TU81063 lncRNA downstream 83748 66006033 ~ 66006238 (+) True G73334
TU81040 lncRNA downstream 90592 66012877 ~ 66013340 (+) True G73311
TU81037 lncRNA downstream 91796 66014081 ~ 66019044 (+) True wu:fj16a03
TU81225 lncRNA downstream 330836 66253121 ~ 66253342 (+) True G73488
XM_021608300.2 mRNA upstream 4200 65898427 ~ 65911535 (+) True LOC110527154
XM_021608290.2 mRNA upstream 86992 65826347 ~ 65828743 (+) True hcar1-3
XR_005052545.1 mRNA upstream 116333 65794987 ~ 65799402 (+) False LOC110527123
XR_005052546.1 mRNA upstream 116333 65795000 ~ 65799402 (+) False LOC110527123
XM_021608274.2 mRNA upstream 218407 65680024 ~ 65697328 (+) True LOC110527114
XM_036989801.1 mRNA downstream 71583 65993868 ~ 65999848 (+) True LOC110532572
XM_021608317.2 mRNA downstream 77972 66000257 ~ 66003340 (+) True LOC110527177
NM_001124310.1 mRNA downstream 91900 66014185 ~ 66019038 (+) False wu:fj16a03
XM_021599594.2 mRNA downstream 429126 66351411 ~ 66355894 (+) True prph2b
XR_005052559.1 mRNA downstream 495210 66417495 ~ 66422887 (+) False LOC118965274
TU79281 other upstream 1014111 64809589 ~ 64901624 (+) True LOC110526969
TU77508 other upstream 2640439 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 4182347 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 4600483 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 5973671 59941486 ~ 59942064 (+) True G66188
TU81252 other downstream 365394 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 498210 66420495 ~ 66424081 (+) True LOC118965274
TU81852 other downstream 833922 66756207 ~ 66758984 (+) True G74067
TU81938 other downstream 862050 66784335 ~ 66784969 (+) True G74139
TU83729 other downstream 2452220 68374505 ~ 68374929 (+) True G75747

Expression Profile