RNA id: TU83729


Basic Information

Item Value
RNA id TU83729
length 425
RNA type TUCP
GC content 0.44
exon number 1
gene id G75747
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68374505 ~ 68374929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcactggacccatacgatcacttggctacgcatgcctctccctaatatcaatatgccttgtctattactgtcctggttagtgattactgtcttatttcactgtagaacctctagccctgctcaatatgccttaaccgaCCATGTTGTTtcacctcccacatatgcgatgacatcacctggtttaaacgtctctagagactatatctctctcatcattactcaatgcctaggtttacctccaatgtactctcttcctaccatacctttgtctgtacattatgccttgaatctatgctatcgtgcccagaaacctgctccctttactctctgttctgaacatgCTAGATGGCCACTCCTTATAGCATTTAGCCGTActcttatcctacttctcctctgttcctctggtgatgtagaggttaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83673 lncRNA upstream 88879 68232213 ~ 68285626 (+) True G75702
TU83092 lncRNA upstream 271849 68099714 ~ 68102656 (+) True G75167
TU83090 lncRNA upstream 277831 68095675 ~ 68096674 (+) True G75165
TU83027 lncRNA upstream 295017 68078074 ~ 68079488 (+) True G75117
TU83071 lncRNA upstream 298438 68072671 ~ 68076067 (+) True G75151
TU83727 lncRNA downstream 2788 68377717 ~ 68378334 (+) True G75745
TU83891 lncRNA downstream 70469 68445398 ~ 68445652 (+) True G75888
TU83896 lncRNA downstream 84394 68459323 ~ 68460387 (+) True G75893
TU83958 lncRNA downstream 121672 68496601 ~ 68497921 (+) True G75948
TU84030 lncRNA downstream 179684 68554613 ~ 68554908 (+) True G76016
XM_036983601.1 mRNA upstream 6508 68339037 ~ 68367997 (+) False fbxw4
XM_036983585.1 mRNA upstream 51568 68316332 ~ 68322937 (+) False fgf8a
XM_021609408.2 mRNA upstream 51568 68316336 ~ 68322937 (+) False fgf8a
XM_021609399.2 mRNA upstream 51568 68316341 ~ 68322937 (+) True fgf8a
XM_036983557.1 mRNA upstream 79099 68275379 ~ 68295406 (+) False slc2a15a
XM_021599833.2 mRNA downstream 30568 68405497 ~ 68408288 (+) True borcs7
XM_021609473.2 mRNA downstream 59637 68434566 ~ 68437539 (+) True inaa
XR_005053624.1 mRNA downstream 79908 68454837 ~ 68454893 (+) True LOC118966747
XM_036983666.1 mRNA downstream 111985 68486914 ~ 68495090 (+) True LOC118965305
XM_021609567.2 mRNA downstream 144865 68519794 ~ 68548397 (+) True LOC110527930
TU81938 other upstream 1589536 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 1615521 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 1950424 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 2086036 66287679 ~ 66288469 (+) True G73515
TU80728 other upstream 2452220 65915735 ~ 65922285 (+) False LOC110527164
TU86384 other downstream 2196736 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 2661541 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 5176687 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 5196137 73571066 ~ 73571737 (+) True G82111
TU92487 other downstream 6534296 74909225 ~ 74909806 (+) True G83836

Expression Profile