RNA id: TU81282


Basic Information

Item Value
RNA id TU81282
length 370
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G73536
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66335295 ~ 66342335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacagagcaggtagacctagacagagcaagtgagtacaggtagacctagacagagcaggtgagtacaggtagacctagacagagcaggtgagtacaggtagacctagacagagcaggtgagtacaggtagacctagacagagcaggtagacctagacagagcaggtgagtacaggtagaccttgacagagcaggtgagtacaggtagacctagacagagcaggtgagtacaggtaggcctagacagagcaggtgagtacagctagacctagacagagcaggtgagtccaggtagacttagacagagcaggtgagtacaggtagacctagacagagcaggtatacctagacagagcaggtgagtacaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81238 lncRNA upstream 66311 66268585 ~ 66268984 (+) True G73501
TU81233 lncRNA upstream 73702 66261094 ~ 66261593 (+) True G73496
TU81229 lncRNA upstream 78979 66256094 ~ 66256316 (+) True G73492
TU81225 lncRNA upstream 81953 66253121 ~ 66253342 (+) True G73488
TU81037 lncRNA upstream 316251 66014081 ~ 66019044 (+) True wu:fj16a03
TU81267 lncRNA downstream 18874 66361209 ~ 66457570 (+) True G73528
TU81306 lncRNA downstream 27909 66370244 ~ 66371618 (+) True G73552
TU81399 lncRNA downstream 150804 66493139 ~ 66493679 (+) True G73640
TU81370 lncRNA downstream 221464 66563799 ~ 66564430 (+) True G73611
TU81369 lncRNA downstream 226310 66568645 ~ 66569036 (+) True G73610
NM_001124310.1 mRNA upstream 316257 66014185 ~ 66019038 (+) False wu:fj16a03
XM_021608317.2 mRNA upstream 331955 66000257 ~ 66003340 (+) True LOC110527177
XM_036989801.1 mRNA upstream 335447 65993868 ~ 65999848 (+) True LOC110532572
XM_021608309.2 mRNA upstream 413010 65915581 ~ 65922285 (+) False LOC110527164
XM_021608300.2 mRNA upstream 423760 65898427 ~ 65911535 (+) True LOC110527154
XM_021599594.2 mRNA downstream 9076 66351411 ~ 66355894 (+) True prph2b
XR_005052559.1 mRNA downstream 75160 66417495 ~ 66422887 (+) False LOC118965274
XM_021608422.2 mRNA downstream 207928 66550263 ~ 66567928 (+) False LOC110527255
XM_021608430.2 mRNA downstream 207928 66550263 ~ 66567928 (+) False LOC110527255
XM_021608439.2 mRNA downstream 207930 66550265 ~ 66567928 (+) False LOC110527255
TU81252 other upstream 46826 66287679 ~ 66288469 (+) True G73515
TU80728 other upstream 413010 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other upstream 413010 65915735 ~ 65922285 (+) True LOC110527164
TU79281 other upstream 1433671 64809589 ~ 64901624 (+) True LOC110526969
TU77508 other upstream 3059999 63274963 ~ 63275296 (+) True G70011
TU81346 other downstream 78160 66420495 ~ 66424081 (+) True LOC118965274
TU81852 other downstream 413872 66756207 ~ 66758984 (+) True G74067
TU81938 other downstream 442000 66784335 ~ 66784969 (+) True G74139
TU83729 other downstream 2032170 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 4229330 70571665 ~ 70654961 (+) True G78121

Expression Profile