RNA id: XR_005052560.1


Basic Information

Item Value
RNA id XR_005052560.1
length 7157
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110527278
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66638925 ~ 66734658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGACCGGCTCGCAAAACACAGCCAGACGGTTTCAGGAGACCAAATGCCAGCTTCATTGAACAAGCTCGGTTATCGAGAATAGAGACAGGAGGGACAGACGTTTCCagtgtgcagacacacacataacaatacacagaAAGCTCTGGGGAACTCGGGGAAAAGGACATTTTCACAGCCTCAAGAACTTCGGTAGGAGAAAGCAGAAAGAAGACCAATCGTTTCAAATATAAATCAAGGGCAGTGGACACGCGGGAGTTGATTATTCATTCCGATAACTTGTGGAATTATAAGGGTaacaacaatttaaaaaaactaCCTCCGCCATTTCATATTTGTATTAAATTGTTCCTTttctttttaattttattttatcaCCTGTCCTCTGAAGAGCTGACAGCCAGACGGTGTAGTAGAATTGCAGTGCAGTGCGTAAAGAAACTGAACGCAGCACCAGGAGACGGAACAGCTCACTGCGTTTACCAACAAGAGACAGTGAGGAGGAGTGAGCGAGAGACCGACTGATTTTTTTTGTATTCTTGTATTTTTTATATCATATTTATTAATTTATAGCCTACGCgaacatatttatttttttccaaTTGTTGGTTCTGTTTGggtcagattttttttcttcttcattttttGGAATATGGTTGGGGAAATGGAATCGAAGGAGAAACCTAAGCCCACCCCAGACTATCTCATGCAGCTCATGAATGATAAGAAACTGATGAGCAGCCTTCCCAACTTCTGCGGGATTTTTAACCACCTCGAACGGCTGCTTGATGAAGagatCAGCCGGGTGCGGAAGGACATGTACAACGACACGCTAAATGGCAGCACAGAGAAGCGGAGCAGCGAGCTCCCTGACGCAGTGGGCCCCATCGTGCAGCTCCAGGAGAAGCTCTTTGTCCCTGTAAAAGAGTACCCCGATTTTAACTTTGTGGGCCGGATCCTGGGACCACGGGGGCTGACAGCCAAGCAGCTGGAGGCAGAGACAGGATGTAAAATCATGGTGCGCGGGAAGGGCTCCATGAGGGACAAGAAGAAGGAGGAGCAGAACCGAGGAAAGCCCAACTGGGAGCACCTCAATGAGGACCTGCATGTCCTGATCACGGTGGAGGACGCTCAGAACCGCGCTGAGATCAAGCTGAAGAGGGCCGTGGAGGAGGTCAACAAACTACTGGTGCCTGCGGCGGAGGGAGAGGACAGCCTGAAGAGGATGCAGCTGATGGAACTGGCCATCCTCAACGGCACCTACCGAGACGCCAACATCAAGTCACCTGCCCTTGCCTTCTCTTTTGCAGCGAACGCCCAGGCGCCCCGCATCATCACCGGCCCCGCCCCTATGCCCCAGAATGCCCTGCGCACGCCCACCCCGGCCGGCCCCACCCTAATGCCCCTGATCCGACAGATCCAGACCTGCATGCCCAACGGCTCGCCCCACCCGGGCGTCATGACCCAGGGTCCCGAGGCGGGCCTCATATACGCGTCGCCCTACGATTACCCCTACACGCTGGCCCCTGCCACCTCCATCCTGGAGTACCCCATCGACTCCAGCGGGGTGTTAGCGTCCTCAAAGGCCGAAGAGCTGCCCCTCTACCTGGGGTTTCAGACCTGTCACTTTCCCATCACTGTGCAGCGAGGAGAGCCCTCCAACCGGCCTCCCTTTTAAAGAAacacccccttccctccctccttccctccatcccctcacacaacacacacacacctcctcctccccccctctctccctccccgccaCCACACATTGGACTGGTCGAGGATCGGCCCTCTCTGAACAACCACAAGCCACATGGGGAAGCCTCAGCCCTTCCTCTTTGAACGTCTGTTCAAAGTGACGTGTGTGTTACTGATCAACCCTTTTTGATTTCCTgtcctgatgatgatgatgatatatcTGTGTATGATGATGAGGGAGAATAAGCACTGAGCCCCACACTGCTGGAGACCCCCCTTGGGGCGGGGTCCCCCGTCACCCTCTCTCTTGGGTGTGGCTCTGGGGCATCGGGAGAGGTAACATGAGGTGAGGGGTCAGCGGAGGTCGGGACAGAGGGGTTACGGAGCCAAGGGAGTGGTGGGTTTGTGTTGGTGACGAGGTTAAAGCATCTACTGTAGGCTTGACAGGCTTTATTCACAAAGGGATTTTAGGACTTTCTGTCCCAACACTGACAGTCTTTACTTCACTCTTATCACAATATTCACCGAATTATTATTTCAGCTCAAGTGTAGCCACTCGAAACAACAGGAAGTGAGTGAACAACATGGCCCTTTTGTATCGAGCTTTTTTGTATCGACTCAAAAGGAATGTCCTAAAATGGCTTTGGGAATAGGGCCTGGTGATGCTTCTCAAAGGACCGCCGGACACTCCTGGCACTAATTCCCGGTTCCCTTCCTTTATTCTATAGGTGTGGCTTTCCCCACGAAAGGCTAAAAGAATTTCAAGGATCCTTACTGAGCCCCTCATTCGATCTAAGTGTTAACACACAGACACTTTTGTTTCCCCAACGGCCTCTTAGTATATCGAACCATGAGTCAGGCCTatagcagtcagacagacagaccccctCACTACTGATGTTTACACTGGCCCAACCTCCCCAAAGAGGCACAGCTCTTTATACCATgcatgatgtgtgtgtggtggtatgtGCATCCTGTACACCCGCAGCCACACATGTATATGTTGTTCCACTGACTGCTATGTCTGGGCTTGAGAATCTCTACAAATACTGTCTCGCTTTACTAATCACTTAATTCATtgccttttttctttcttttttttttaataagagaTGTTACTTTTTTTATTACTGCAAATGTGCCTAAAAGCTTTCGTCTCTGGGCTTTAACCAGAGAGTGAGTGATCAGTATTATATTTCAAACGAATAACTAGAGAGATGCACTTCCTGATGCTCAACCTGAGATTATGTGACTAGTAAagctcccctctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgcataaATGCCTAATGTCTGTGAATCTGTAGCAAGGACTCGAGTAAACAATGGATCCTTACAGTCAATGCTACTCCATTGTCATGGATGTTACTAAGTCCAATATTTCTCCTTGTTGCAACAAAATATATGAGTATAATTTGTGCCTTAACATGTATTTCTAATgatttttcctaattttgttagATGTTTGGTCATATATATAAGCCTTTATGATATGATGAATTGAATTGATGGAAATGGTGAAGGAGGAAATGACCTAATCCTTGTTTTGGTCATGTTGTTGCAATCCGAGCAGGTGCAGTGACTACTAAGGTTCGAAGGCACGAACTGCGGGTCCATCCTTACCAAAGGATAGTGACCGCAGACCGAGCCGCCACTGGCAACTAACCCCTGACCTTCTGACCTCTGAACTCTTCACACATGATGACCTGGCCATTGCCTGCCCGCAGATCAGTTCTTCGGTAGAAAGAAAGAACACATAAAGCAGCCTTGGCTTGTTACATTCAGTCATGGCACAGCTTCTCATCAGCCGAATAATGGACACACTATAATGGCTTGGCGGGCCACTCCTGCCTGCCCTGTCTGCTTAATAGGGGGACTGACCCTGGCTCTAGACCTGCACTGAATCATTGTTAAGCAATAAGGTCTGAAATGCCCCCTCTGAGCATCACTGAACGAGTCCCCAGCCAGGCAACttccaaacacaccacaccatactcTAAAACACCCTGGTAACGGCTGGTCGCCTCATCCGGACTGAAGATGAAGAAGGTCGGCACCCTCCCACCCCTCCGACCGCCCAAACCCACCGCATGTCGCCCAGGTGACTTTCCCACTGTCATGGTAACGGAGCTGGCTCTGAATGTATAGCAGCGCGGTGAGGCCTTCCCGAGCAGAGTGCatgcacctctctctgtctctccctctctctgtcactctctgtctctctgtctctgtctctctgtctctgtctctgtctctctctctgtctctctctgtctctgtctctctctctctctctctctctctctctctctctctctctctctgtccacccatATATCCTTGCCAACTGATTACCCCTCTCCCTTCACTGACTCTCTATGAAATCCTGGTTCTGTTATGAAATggaaattggggggggggggggggttcattctAGCAGGACTTGAAGAGAGACTAGGGGTCAAAAAAGAGTATCAAGCGTATAGAAGGTGGAGTACCTGTCCCGTTACCTggcattgttgttgtttttctaccATGAAGGAAGATCTTGCAGTCAACTGTTTTTTTTTAGGATGTAAAAGCCATGCTTGCCTATCTGCTgtacaaatgtattgaaattgTAGATACATGTGTAAAAATGGGGGAGAGAACACCTATGTAAAGAAAATAGACACTTTTATTATACATGGGTGCTCATGGCAAAGAGAAATATCTATTTTTCAAAAACATAGTCTTTTATATCTTCATGTATTGTAAAGAGAAATTTAAAATTAAACCCTTTATGTCATGAAAACAATCCTGTTTTCTTTCTGTGGATGGAGAGGTGAAGACCAAAACAACCTTTCATTTGATTTCGAGGGTTGAGCATTTAACTGAAGTGGAAAAACAACAAAGTGCCTTATTATGGTTTCTGATATCTGAATGTGTCATCCTCAGCCTTTAAGCTGCAGGCCAGGTCAGTACACACAGTCTTCAGCCACAGAGATGCCCTTAGACGGAGTCAGTCACCTCAGCCTTTAAGCTGCAGGCCAGGTCAGTACACACAGTCTGTCAGCCACAGAGATGCCCTTAGACGGAGTCAGTCACCTCAGCCTTTAAGCTGCAGGCCAGGTCAGTACACACAGTCTGTCAGCCACAGAGATGCCCTTAGACGGAGTCAGTCACCTCAGCCTTGTTGCTACACTAGTCAGACACAGTAGGTCTCCTTCCACCATCATTTAAGTGTGACTCTAGGTAGGTACACAAGTTCTTTTTGGTGGCTCCATAGAGTAGTAATATCAGTTATATATTAGTAATCTACCAATTGTGTCAGAGTCTAGGTCATTAGACCCTTTGGTGCAATGTCCtaaagcagggatcatcaactagattcagccacgtgACAATTTATTTTTaagtggatggtcagggggctgggacataaatacaaataaataatttgtagactgaaaatgtaccgcaagaagcccaaacagaaaTAATATGTGACTAAAACATAATAGTTTCAAACCTTGCTCACATTGATATATGATCACAATATCACTCTATTATGCGTGGTAATACTTTGGAAGAGAtgtccaaaattaaaatcacttggagctgatttgcctGTTTTTACAGTCTTGTGGGGCCAATTAAAATCCCCTGTGGGCCAAATTCAGCCCGCGGGCCGCCAGTTGGGTAACCCTGTCCTAAAGGGACAAATATATGATAAAAGAGAGCTGTAACATGTCCAGTTCGTATCTGAACTGAGAAAATGATTGGCCTTATAGTATTTCACTGTGACGCCCCTGAGACTCCGGTTGTCTTTGTCTGTTGAGGATGGCCTCAGAGTTCCCCAATTATTATTTCCAGTAGTATGCTACTCATGCCAGTTCCTAGGTTTTACACACAAGGACATCTTGACATGCATCGTCTTTACAGTTAGTAGTGTTAGAAGTGTCATTCTGGACTGCCTTATGTAGGAGTTGTCATTGGCATAGACATCCCACTACCCGTGGAGCTGACATCCCACATCCCTCTACCATGATGTATCTCTCTACCACCTATCCCATTAGATGAGGACGTGTCTGTTTCTGCCCTCCTGATTTACTTCCTATAAAGGAGTATTGGGTCTATAGTCTTACTGCTGACTCGACACGTGCTGTGTTAATTGGAGGAGAAGGGTTTATGTGATTGTGGTACCTAGTGATTGACTGTAAAGCCTGTGTGTACTTCCTGGTCTGCACCAAAAGATTGCTCCACATCCCCCTCTTTATTTACTATGCAACAGAATGGCCTCTGGTGGTGCATGAAGAGTTTCTGTGTCTCAGATTGTCTTCATGTGTGCCATTTCTTTTCAGTTACAGTATTTATGTTTGCGAAATGATTCTCCAGTGCAATTGCATATGATTATAATCCATTATAAATGATGAATACGTATGGATTCTCAATCACTAATATGATACGTGTTATTATCATTGTTACCAGAAGTCATTATTATATAAGACAATGGATTGACTTTGAAGCGAGGCGAATATGAATATTTTACATATAATTGTACTGGTGATAAAAGAATGGTAGCAAACAAATGGTTTCCTTGGTTGCGAGTGAAGAGACATCAGAACCAATATAGAATGGCATCCCATCCCTTAGTAATGTTACTGTTATGCTATTATCAGAGATTTTTTTTATCTGTGCCATTTTGACAGCATTATTCTTGGACCTGGTGtgtttttttcttttcttctgAGTGTGCAAATCAAGCGTGTTATTCTGTAGGACCCCATGCTGTCGAACAACTGATCCTGTTAGCATTTACTCCATGGATGGTGTGCGACCATACCCAAATGATTTCCTATGAGAAAACAATATGTGTATTTGCAGCCATTGTTACAAGTTTATAATGTATTTTTCTATCTTGTTTTATATGTGtgtaagaaaagaaaaaaaagtgaAATGACTTACATAAACGACAACAGCAGCTACGTTATTTGTTTGATTTTGAGATTCTTTGTAGTTTattaaatctgtttttttttcttctcccttaatcctggtcctggggaaccAAAGAGGTGCACACCTGATTCCTCTAACGGTCAACTCATCATAAAACCTTtgattagtggaatcaggtgtctagtgctagggcaaaaacaaataTGTGCACCCCTTCGggcccccaggaccaggactaaGAAACACTGCATTAAATTGACTCCTTGACAAAGTCTTATCTCTATTACTGATTCAGACCATTGAACTTTTTCCTTTCCTCCCGTGTTTTGTTGTGACGTGTTAGACTTAGCCAGTATTATTTAATAAATGATTCCAAACAGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81819 lncRNA upstream 19712 66618961 ~ 66619215 (+) True G74036
TU81785 lncRNA upstream 45089 66593627 ~ 66593838 (+) True G74002
TU81436 lncRNA upstream 58689 66579520 ~ 66580238 (+) True G73675
TU81435 lncRNA upstream 60879 66577842 ~ 66578048 (+) True G73674
TU81431 lncRNA upstream 65551 66573131 ~ 66573376 (+) True G73670
TU81910 lncRNA downstream 1106 66735758 ~ 66736205 (+) False G74121
TU81908 lncRNA downstream 1244 66735896 ~ 66736205 (+) True G74121
TU81912 lncRNA downstream 2135 66736787 ~ 66736988 (+) True G74122
TU81916 lncRNA downstream 18239 66752891 ~ 66753187 (+) True G74126
TU81917 lncRNA downstream 18866 66753518 ~ 66753851 (+) True G74127
XM_021608422.2 mRNA upstream 70999 66550263 ~ 66567928 (+) False LOC110527255
XM_021608430.2 mRNA upstream 70999 66550263 ~ 66567928 (+) False LOC110527255
XM_021608439.2 mRNA upstream 70999 66550265 ~ 66567928 (+) False LOC110527255
XM_021608449.2 mRNA upstream 70999 66550265 ~ 66567928 (+) True LOC110527255
XR_005052559.1 mRNA upstream 216040 66417495 ~ 66422887 (+) False LOC118965274
XM_021608546.2 mRNA downstream 40216 66774868 ~ 66783655 (+) True yipf3
XM_021608559.2 mRNA downstream 58768 66793420 ~ 66802542 (+) True lrrc73
XM_036983187.1 mRNA downstream 150785 66885437 ~ 66954091 (+) False dlk2
XM_036983196.1 mRNA downstream 150785 66885437 ~ 66954091 (+) False dlk2
XM_036983202.1 mRNA downstream 150785 66885437 ~ 66954091 (+) False dlk2
TU81346 other upstream 214846 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 350458 66287679 ~ 66288469 (+) True G73515
TU80728 other upstream 716642 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other upstream 716642 65915735 ~ 65922285 (+) True LOC110527164
TU79281 other upstream 1737303 64809589 ~ 64901624 (+) True LOC110526969
TU81852 other downstream 21555 66756207 ~ 66758984 (+) True G74067
TU81938 other downstream 49683 66784335 ~ 66784969 (+) True G74139
TU83729 other downstream 1639853 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 3837013 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 4301818 71036470 ~ 71076102 (+) True ccdc85a

Expression Profile