RNA id: TU81912


Basic Information

Item Value
RNA id TU81912
length 202
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G74122
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66736787 ~ 66736988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCTCAGATGCTCAAATGTCTCTCTACTCAAAAACGCACAACACCTCTGCTCTAGCAACCTGCTGTTATGAGTTAAGTTATTGTTATACCGGTTACGCCTGTCAACATTTTCCATATACAACTACTTCTTAGCATGGCAACTAGTCTACAAGTCTCCctccatcacaaacacacacacatactttgtcCATATCCATACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81910 lncRNA upstream 582 66735758 ~ 66736205 (+) False G74121
TU81908 lncRNA upstream 582 66735896 ~ 66736205 (+) True G74121
TU81858 lncRNA upstream 2129 66731819 ~ 66734658 (+) True LOC110527278
TU81819 lncRNA upstream 117572 66618961 ~ 66619215 (+) True G74036
TU81785 lncRNA upstream 142949 66593627 ~ 66593838 (+) True G74002
TU81916 lncRNA downstream 15903 66752891 ~ 66753187 (+) True G74126
TU81917 lncRNA downstream 16530 66753518 ~ 66753851 (+) True G74127
TU81925 lncRNA downstream 31940 66768928 ~ 66770388 (+) True G74128
TU81929 lncRNA downstream 33919 66770907 ~ 66771132 (+) True G74131
TU81939 lncRNA downstream 48096 66785084 ~ 66785570 (+) True G74140
XM_036983106.1 mRNA upstream 2135 66638925 ~ 66734652 (+) False LOC110527278
XM_021608459.2 mRNA upstream 2135 66638927 ~ 66734652 (+) False LOC110527278
XR_005052560.1 mRNA upstream 2135 66638927 ~ 66734652 (+) False LOC110527278
XM_021608439.2 mRNA upstream 168859 66550265 ~ 66567928 (+) False LOC110527255
XM_021608546.2 mRNA downstream 37880 66774868 ~ 66783655 (+) True yipf3
XM_021608559.2 mRNA downstream 56432 66793420 ~ 66802542 (+) True lrrc73
XM_036983187.1 mRNA downstream 148449 66885437 ~ 66954091 (+) False dlk2
XM_036983196.1 mRNA downstream 148449 66885437 ~ 66954091 (+) False dlk2
XM_036983202.1 mRNA downstream 148449 66885437 ~ 66954091 (+) False dlk2
TU81346 other upstream 312706 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 448318 66287679 ~ 66288469 (+) True G73515
TU80728 other upstream 814502 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other upstream 814502 65915735 ~ 65922285 (+) True LOC110527164
TU79281 other upstream 1835163 64809589 ~ 64901624 (+) True LOC110526969
TU81852 other downstream 19219 66756207 ~ 66758984 (+) True G74067
TU81938 other downstream 47347 66784335 ~ 66784969 (+) True G74139
TU83729 other downstream 1637517 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 3834677 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 4299482 71036470 ~ 71076102 (+) True ccdc85a

Expression Profile