RNA id: XM_021608559.2


Basic Information

Item Value
RNA id XM_021608559.2
length 2110
RNA type mRNA
GC content 0.48
exon number 6
gene id lrrc73
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66793420 ~ 66802542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACAGCCCCGGTCAGACCAACGCCAGCACTGCACGTGATCAATAGCAATAACCTACTCTGTACTGAGACCACAGCTATATATATATTCGCCCTCGACTTGCATTTTTTACTCCTGAAGAAACATTTGCTCAGACCAGCAATATTTCCCGAGGTCTGCAGCCACACATATTCTTTGAGGAGGCTGCACGCGCCCTTGACGACTGAGGAAAACGAGCATTAGTAAACTAATTAGAGAGCAACATGTGACAGTCAGAAAAGGACTGATTGCAAAGATGTTTCTGATGACATTGAGAAGAGGGTGTCCATAGTAACCGCTACCTGCCGCAAAAGGGGCAAACAAACGATCGCCTTTGCTCCGGTGCCAAGCTCAAAACATGACTGGAATGCAACCCGTTTGTTCTGCATGAGGACCTGGAAAACTGCACGACATTCAATTTTATTGGAGCCTGGCTAATATGTATCGACGAATGTACCCATTCACGGCCTGTGTAAGAAGAATCGCGAAGGGTTTAGCGAGCTACGTGGTAGCAGGAGGTTATGTCAGCGCTTGAAACGGCGCATGGGGGTTTAGGAACGATTTAACTTCAGAACACCTACCTCGTGTGCTCTTTTCCTATGCATAGCCTAATAAGAAATGCTCAATTAAACCAGCTACAATACAGACAGTCTTGTAAATATCGGATATCGTAAATAGCCTATTGACTTTGAAATGTAATTTAACAGCCTACCGACGTTGGATAATTGTATGCCTACAATGCATGTCCATCTCTGCTGGGCACAAACCTTGAATGTAATGTAGGCCTAGTAGACAAACATTTACCAAAATGCTACCAGGTTCTATTCAAATAACGGGAGAGGCACTGTCGGGAGCTGAGATCAAGGATATTTGTGAAAGCCTAAAAGAGAACAGTGTGAGGCTTTTGTCTATCAGGGGATGTCAGCTTTCAGACCGAGACTTCGGACGGGTGTGTCGCGGAGTGACGGAGTCCCACTCACTGGCGCAACTCAACCTGAACCTCGGTGTGGTCTCCACCATCAACCGAACCAAGCATCTTGCCGATGCACTCAAGACCAACAGATCGATCCAGACCCTTTTTCTCCACGGAAGCCCCCTCCTGGATGCAGGATTGGTCACACTTAACACTGCTCTTTCCACTCACCCTTTACTGGTCTCTCTGGACCTGGGGGACTGTATGCTGGGGGACGAGGCACTGCGGCTAATCTGTGGCATGCTGCCTCCGGACGGGGCCAAATCAGGTCTTAGGGAGCTGACTCTGAGTGCAAACCCCAGCATCACCACAAAGGGCTGGGCCCGCTTGGCCATCGCTGTGGCCCACAGCTCCCAGCTCCGAGTCCTCAACCTGGACTACAACCCCCTGGGGGACCAGATTGCTGGTATGCTAGCCGTGGCTGTGGCATCCAGCAGAACTCTGGAGGTGTTAGATCTGGAGGGAACAGGCCTCACAAACCAGTCAGCACAGGTATTCCTGGACGTGGTGGAGAACTACCCCACCTGTCTGCGCATGCTGGTCCTGGCTGAGAACGCCATCAACCCCGAGCTGCAGCAGCAGATCTCAGACCTGCTCTCCGAGGGAGAGGAGGACGACGACAAAGAGAGCGAGGCCCGATGCAGCGCTGGCATCCCCACCAGGGAGAAAACCACCTGGGTCCCCCATAGTAACTCCCAACCCCAGAGGGTCCTGCTGACGTCAGGTCTAGGCGAGAGCCTACTAGCAGAGACTGAGATGTGATTCCACAGCCttcctaccttttttttttttaatacctcTTTTCCTTTTGCTAGTCTGCACATAATTGTGTTAAAGATCACCTAGTAGCCTGCAACCAATTACACTTTTTGCATGACCTGTAGCACTTTtacataacacaatacattttGGAGCAGGCACAAAATCCTTAAAACCCACACCAAGTGACTTATAGGCAatagtgaattatttattttaaacatgCACAGTCTATTTATAGTTCCGATTGTGAAGGTTATGTAACCAATACAAGTCTGTATGCTCTGATATGATAGATCGACTATATATGATTGTTGTGATGGTCTGATGTCAGAATAAATCTGTTTACATCTTCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81945 lncRNA upstream 602 66792619 ~ 66792818 (+) True G74146
TU81939 lncRNA upstream 7850 66785084 ~ 66785570 (+) True G74140
TU81929 lncRNA upstream 22288 66770907 ~ 66771132 (+) True G74131
TU81925 lncRNA upstream 23032 66768928 ~ 66770388 (+) True G74128
TU81917 lncRNA upstream 39569 66753518 ~ 66753851 (+) True G74127
TU81980 lncRNA downstream 33962 66836504 ~ 66837614 (+) True G74174
TU81963 lncRNA downstream 49026 66851568 ~ 66852284 (+) True G74157
TU82002 lncRNA downstream 62870 66865412 ~ 66866511 (+) True G74195
TU82019 lncRNA downstream 154578 66957120 ~ 66958578 (+) True G74208
TU82093 lncRNA downstream 257928 67060470 ~ 67062188 (+) True G74266
XM_021608546.2 mRNA upstream 9765 66774868 ~ 66783655 (+) True yipf3
XM_036983106.1 mRNA upstream 58768 66638925 ~ 66734652 (+) False LOC110527278
XM_021608459.2 mRNA upstream 58768 66638927 ~ 66734652 (+) False LOC110527278
XR_005052560.1 mRNA upstream 58768 66638927 ~ 66734652 (+) False LOC110527278
XM_021608439.2 mRNA upstream 225492 66550265 ~ 66567928 (+) False LOC110527255
XM_036983187.1 mRNA downstream 82895 66885437 ~ 66954091 (+) False dlk2
XM_036983196.1 mRNA downstream 82895 66885437 ~ 66954091 (+) False dlk2
XM_036983202.1 mRNA downstream 82895 66885437 ~ 66954091 (+) False dlk2
XM_036983191.1 mRNA downstream 83066 66885608 ~ 66954091 (+) False dlk2
XM_021608609.2 mRNA downstream 128531 66931073 ~ 66954091 (+) False dlk2
TU81938 other upstream 8451 66784335 ~ 66784969 (+) True G74139
TU81852 other upstream 34436 66756207 ~ 66758984 (+) True G74067
TU81346 other upstream 369339 66420495 ~ 66424081 (+) True LOC118965274
TU81252 other upstream 504951 66287679 ~ 66288469 (+) True G73515
TU80728 other upstream 871135 65915735 ~ 65922285 (+) False LOC110527164
TU83729 other downstream 1571963 68374505 ~ 68374929 (+) True G75747
TU86384 other downstream 3769123 70571665 ~ 70654961 (+) True G78121
TU87354 other downstream 4233928 71036470 ~ 71076102 (+) True ccdc85a
TU90667 other downstream 6749074 73551616 ~ 73571737 (+) False G82111
TU90669 other downstream 6768524 73571066 ~ 73571737 (+) True G82111

Expression Profile