RNA id: XM_021607506.2


Basic Information

Item Value
RNA id XM_021607506.2
length 1648
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110526492
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62360989 ~ 62366199 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAATAACAATAGGTCAAATTCGCTAAATCCAATCGCAGATCTGGACCAGACACACGTTAggaacagctagctagctgttcgTTTGGTGAAAGTACTTCCTTGCCCAAGACGAGCTGTTATGAGTCCCTAATTGTCAACTCCCACAGTACAACAGAATTGTGATGGGATATGGCGGCACCAGAAACTCAGCTCATGTTAAGCGTTGGGTTAATTGAGAAAGATGTGAATGCAGACACCTTGTGGGTGTGGTGCTATCCCTCAGTCAGTGCTGAGCTCCGGGAGGTCCTGCTCAGTAAGTGCTGTCTCAGACAGGACAGCCGAGGCTTGCACACTTTTGTGTTTGGCCAGTTCCGCCGTACCTGGTACTACATATCCACTGTAGAGGTGCAGGAACCAACCGCTCTAAAGAAGGTGACACATTTTTCAATAGTTGTCACAACAAAGGACTTCAACCCTGAGAAGTATGCAGCATTCAGTCGAGTACTATGCAGAATATACATCAAACATGGGAGCCCTGTGAAAATGATGGAGGGTTACATTGCAGTCCTCACCAAAGGCGTCTGCCAGAGTGACGAGAATGGCTCCTTTCTCATCAAGGACTACGATGTCAGGAAGGCCTACTTAGCAGGCTCAGTGAAAGATGTGGTGTCCCAGTTTGGGATGGAGACCATCATCCTGTACACAGCCCTTATGCTAAAGAAGAGGATCGTGGTCCATCACCCTCAGGTTGAAGCACTGTTGGAGTTCACGAGAGCTCTTCCGGCTCTGACATGGCACAGGAAAGACTGGTCCATTTTGCACCCTTATGTCCACCTGACTGACAGTGAGCTCGAGAATCTCAGGACGTGCACTGGGTACGTCGCAGGATTTGTTGATCCAGAAGTGAGCAACAGATCGGACTTGTTTGACGTATATGTAAACCTCCCAGATAGTGAGATTACTATATCCCAGAGTGCCAAAGAGGCCATGTCTATGGGAAAGCTGCACAAAGACATTGGGCTCGTCATTGTCCAGTCTGCAGAGAATGCTGATAGAACAGACGGGCAGATTATCAAGGACATTTCCATAAAGACGAGGGAGATCCTTGCTAACTTGGCGTCATTAGCCGAGGAATGTGAGAACTCTAAAATCACCCTGGAGACCTTAAAACAGCGCCACTTCCCGCCTGCTACAGAGAACTTCCTGTTTCACTTGGCAGCTGCTGAGCAGCTCCTCAAGATATGACCCTTGATCTCCTACATCATGTAACATGCCATGTGGTGTGAGGACACTGAATATTAGCATAGGCATTCATCTATGTAATTATACATACAGTGGCGTGTTAAGGAGAATGTGAAGAACTCAGGTGTTAGGTATTGCACACAATTGCATTCCTGACTCTTAACAATACTAACAGAGCCTACTTTTCACAATGTAACAGACAAATGAGATATACAGACATTGTCTTGTTTTGACAATAATACAATAACATTTACATAGCATTCCATAGTTCAGCAATTCAATAGTTAATCTTAAAACCGATAACAGATTAATTTGAGTTCTCAAGAACCTTGATTTAGCATGTTATATTTCAGAATTAAAGAAAGATCTATGTGAAAtattgtatactgaacaaaaatatacaataaatgtaacaatttcaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75404 lncRNA upstream 378068 61981733 ~ 61982921 (+) True G68132
TU75402 lncRNA upstream 382926 61977849 ~ 61978063 (+) True G68130
TU75399 lncRNA upstream 384892 61975881 ~ 61976097 (+) True G68127
TU75390 lncRNA upstream 395811 61964814 ~ 61965178 (+) True G68119
TU75389 lncRNA upstream 396237 61964237 ~ 61964752 (+) True G68118
TU75678 lncRNA downstream 48481 62414680 ~ 62416124 (+) True G68384
TU75782 lncRNA downstream 165970 62532169 ~ 62532538 (+) True G68469
TU75785 lncRNA downstream 169409 62535608 ~ 62535941 (+) True G68472
TU75802 lncRNA downstream 173916 62540115 ~ 62540433 (+) True G68479
TU75823 lncRNA downstream 202154 62568353 ~ 62568619 (+) True G68498
XM_021607433.2 mRNA upstream 192302 62153349 ~ 62168687 (+) True LOC110526440
XM_021607421.2 mRNA upstream 263484 62064250 ~ 62097505 (+) True fam204a
XM_021607213.2 mRNA upstream 615832 61733628 ~ 61745157 (+) False sec23ip
XM_021607206.2 mRNA upstream 615832 61733629 ~ 61745157 (+) True sec23ip
XM_021607193.2 mRNA upstream 650920 61687566 ~ 61710069 (+) True inpp5f
XM_021607542.2 mRNA downstream 17491 62383690 ~ 62390008 (+) False LOC110526511
XM_036982113.1 mRNA downstream 17491 62383690 ~ 62390008 (+) True LOC110526511
XM_036982186.1 mRNA downstream 69083 62435282 ~ 62492911 (+) False LOC110526533
XM_036982214.1 mRNA downstream 74565 62440764 ~ 62441131 (+) True LOC118965226
XM_036982179.1 mRNA downstream 93861 62460060 ~ 62492911 (+) False LOC110526533
TU75188 other upstream 627601 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1045737 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2418925 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3035860 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 3660610 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 908764 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 2443390 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3549536 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3549536 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3921480 66287679 ~ 66288469 (+) True G73515

Expression Profile