RNA id: XM_021607421.2


Basic Information

Item Value
RNA id XM_021607421.2
length 1276
RNA type mRNA
GC content 0.42
exon number 7
gene id fam204a
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62064250 ~ 62097505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATCGGCTTTAGTGCAGCGATAGAACAGTTTTCATTGGTAGAGACTATATTGTTTTTCCCAATCGGAGTAGTTGTTTTGCAAGAGTCACAATGTCCACCAGGAAGTGAAAATGTTTACAACGCTTCAAGTAGTTTTCGATGCATTTTTAAAATATCAGTTTGACTAACACGTTTTATAAACCGAGTTGCTGTTGATTTGCCATTCTCAAGATGTATAGCGGACTTTTACCGAAAGGTCTGAGCGATGCAGAAATTAGTTCAGATGATGAGGACGATCAAGGACAAAGTGTAGTTGCAAATCAAGAAAAAACGTTAGCCTCAAACAAATGTCGTGCAGTTGGACTTTCGCGTGGTCTTAAGGAAAACGTTGGGACACTTGTAGACACAAGTTCTTCCCATATACAGCCCGTCGTAGAACATGACAAGTCGTTGGACTGCTTACCCGGGGTTTCCGAGGAGAAGTGGCAAAGATTTAAAGAGCTACAGAAGAAAAAAGATGAGATTAAGAAGATGAAGCTCCCCAAAAAAAGACAGCGGGGAAAACGACGACATAAGAAAGATGATGAATCAGGGACTAAGAACATGGAATCAAACAATGAAAGAGAGCCTCAAGCTGAGCATGACAAGCATTGGGATGGGCTGACGCAGTACTTTGGCATCAATGATAGATTTCAACCCCCTGCCTGTTACAAGCCTGCTCCCAAGTCCAGCTTAGAAAAGAGCATAGAGAGCGCCATCGCTGAAGGGGACTTTGGGAAGGCGGAGGAGATGAGCGACAGACTCGCCACTCGAGAGCTGGCCGTGAAAATCGCTCAAGCCGCCGATTGCCGTGACTTTGTGCAAAGCAAACAGGAAGCGGAGGCTTCTCGGGCAGCCCAGAAAAGGAAGACGCAAATCGCTTGGGGGTTTGAAGCCAAGCAAAGATGGGAAACCAAAAGCAACATGGGATATATGTGACATAAACCCAGAAGAGAAAGAAAATTAAATTTTTGATGTAACTTCTCAGTTAATTTAATAACGTTTGTTAGAAAAGATGTTTGTACCTGTACAATTTTGAGAGGAAATGTCAGGATACTGTACAAAACAATAACAATTAAAAAACAAAGCCTGTATAAGATGAGAATTATTGTATAAGATGAGAATTATGGACTGTTCAAATGAATTCTCTGAGCACTCCATGGTGGCTGCTGTGTGTGCGCTATTTTCCATTTACATTTCTGTGATTTGAGCATTTTGAGCCTTTTTCCTTCCAATTAAATCTGGTGTACATTACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75404 lncRNA upstream 81329 61981733 ~ 61982921 (+) True G68132
TU75402 lncRNA upstream 86187 61977849 ~ 61978063 (+) True G68130
TU75399 lncRNA upstream 88153 61975881 ~ 61976097 (+) True G68127
TU75390 lncRNA upstream 99072 61964814 ~ 61965178 (+) True G68119
TU75389 lncRNA upstream 99498 61964237 ~ 61964752 (+) True G68118
TU75678 lncRNA downstream 317175 62414680 ~ 62416124 (+) True G68384
TU75782 lncRNA downstream 434664 62532169 ~ 62532538 (+) True G68469
TU75785 lncRNA downstream 438103 62535608 ~ 62535941 (+) True G68472
TU75802 lncRNA downstream 442610 62540115 ~ 62540433 (+) True G68479
TU75823 lncRNA downstream 470848 62568353 ~ 62568619 (+) True G68498
XM_021607213.2 mRNA upstream 319093 61733628 ~ 61745157 (+) False sec23ip
XM_021607206.2 mRNA upstream 319093 61733629 ~ 61745157 (+) True sec23ip
XM_021607193.2 mRNA upstream 354181 61687566 ~ 61710069 (+) True inpp5f
XM_021607133.2 mRNA upstream 380082 61677780 ~ 61684168 (+) True bag3
XM_021607121.2 mRNA upstream 418069 61635163 ~ 61646181 (+) True pkd2l1
XM_021607433.2 mRNA downstream 55844 62153349 ~ 62168687 (+) True LOC110526440
XM_021607506.2 mRNA downstream 263484 62360989 ~ 62366199 (+) True LOC110526492
XM_021607542.2 mRNA downstream 286185 62383690 ~ 62390008 (+) False LOC110526511
XM_036982113.1 mRNA downstream 286185 62383690 ~ 62390008 (+) True LOC110526511
XM_036982186.1 mRNA downstream 337777 62435282 ~ 62492911 (+) False LOC110526533
TU75188 other upstream 330862 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 748998 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2122186 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2739121 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 3363871 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 1177458 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 2712084 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3818230 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3818230 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 4190174 66287679 ~ 66288469 (+) True G73515

Expression Profile