G54411


Basic Information

Item Value
gene id G54411
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49827425 ~ 49840996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU60662
tttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcacctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatttctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctatgATC

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60662 True 555 lncRNA 0.44 2 49827425 49840996

Neighbor

gene id symbol gene type direction distance location
LOC110532387 tmtc3 coding downstream 4453 49763995 ~ 49822972 (-)
cbpa1 cbpa1 coding downstream 598794 49224712 ~ 49228631 (-)
LOC110524388 LOC106573117 coding downstream 618908 49180132 ~ 49208517 (-)
LOC110524381 cav2 coding downstream 722690 49098552 ~ 49104735 (-)
LOC110524368 LOC106573119 coding downstream 746711 49067489 ~ 49080714 (-)
LOC110524413 LOC106573141 coding upstream 7382 49848378 ~ 49876492 (-)
LOC110524441 LOC106573156 coding upstream 419408 50260404 ~ 50270301 (-)
LOC110524445 LOC106573110 coding upstream 526570 50367566 ~ 50374531 (-)
LOC110524488 LOC106573155 coding upstream 877640 50718636 ~ 50752172 (-)
LOC110524514 borcs5 coding upstream 936720 50777716 ~ 50792069 (-)
G54367 NA non-coding downstream 121214 49701222 ~ 49706211 (-)
G54171 NA non-coding downstream 404838 49422321 ~ 49422587 (-)
G54164 NA non-coding downstream 413227 49413980 ~ 49414198 (-)
G54160 NA non-coding downstream 416462 49410646 ~ 49410963 (-)
G54159 NA non-coding downstream 416917 49410298 ~ 49410508 (-)
G54425 NA non-coding upstream 10048 49851044 ~ 49901421 (-)
G54513 NA non-coding upstream 108177 49949173 ~ 49949911 (-)
G54528 NA non-coding upstream 121646 49962642 ~ 49962841 (-)
G54536 NA non-coding upstream 126647 49967643 ~ 49968548 (-)
G54572 NA non-coding upstream 146199 49987195 ~ 49987566 (-)
LOC110532382 LOC106573120 other downstream 841508 48971580 ~ 49044257 (-)
LOC110524264 LOC106573263 other downstream 1523289 48291626 ~ 48304829 (-)
LOC110524104 LOC106573248 other downstream 2266216 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 2448882 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 2537744 47288939 ~ 47289681 (-)
G55408 NA other upstream 570638 50411634 ~ 50412128 (-)
G55627 NA other upstream 924367 50765363 ~ 50767431 (-)
G56372 NA other upstream 1559731 51400727 ~ 51412569 (-)
G56764 NA other upstream 1905621 51746617 ~ 51747220 (-)

Expression


Co-expression Network