XLOC_020201 (BX664625.1)


Basic Information

Item Value
gene id XLOC_020201
gene name BX664625.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9751117 ~ 9755111 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040177
CCACAATAGCTTAAATCAACAGTGTTGTTTGAACAAAGTATTTTCGGATATGTAAGCTTCAAGACTGGATTTTGTTAACGGATATGGTGCtttatgtttttttcagtttttgtcttTGGCTTTTGTGTGGTGTTTCTGGTGTTCAAGCAGAAGAAACAGAGATGAAATCAGTGACTGAGGGAGATTCTGTCACTTTAAACACTGGtgttactgaaataaaaagcaaTGATCAGATACTGTGGTCATTTAGGTTTAATAATACAGAGACTCGTATAGCTGAAATCTATAAACAGAAAAACTATACATATGATAATGAGAATGAGAGATTCAGACACAGACTACAGTTAGATGAgaagactggatctctgaccatcacaaacATCAGCAAAATACACTCTGGACTTTATAAACTAATGATCATCAGTGGAGATAACACATACAAGACTTTCAATATTGATGTCAATGGTATTCTGGCAGTTCCTGTCGTTATCAGAAATTTACCAAGTTTAGCTTCATCAGGATCCTCAAACCAGCATTGTTCAGTGttgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctttctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgaTCAACAACACCATCACAAACCACACCACACATCTGGACATCAGTCAATCCTGTCAGTCAAGATCAGAATCCAGAACTTCACTTCATCTCCTGGTTGTTTTGCTGCTGCTGTTTTTAATCACAGTTACAATCGTGACAATATTCTGTCACCACAAAAAGCATGTAAAACAAAAAGCTCAGACCAATGAGGAAGATATCGATTATACTGAACCAACACTTATTCCACATGGAGATCAGGATACGagaGCTGAAGAACAGGAACAGACGGTGTATTCAGAAGTCTTTTTGAAATGCTGATCATGTAAAGTtgtaatattatacattttaacacAGGTTTGAACATGTTGAAGCTCAAAACCCTTGTTTCTACAAATGGCTGAAATTCACATTTAAGAAACCTTTATTGTCTGAAGATTtcacaaatattaaaatgacaatcCACTTTCAGGAACTGTGATGTGTAGTATACAACAcagtaaaacaaaatgtaaagaaaaaaaaacttgcaggtATTGATGCCTTAAAGATAAAAATATCTTGTAATAATTTAAGTTGATTTAGCAAAGAAacacaacatttttgtttaaacCTGTTTTAGGGTTTACATTTAATTCCAATTCTGTGTTTTGCTGTGCTATGACTCCCTCTGCAGGACAAAGAGCTAAACTGGggataagattaaaaaaaaatgtattgctgcttttataaaaaaatcaGTTCAACTTGATGTAAACTgttaatagttttacatttttgcatacatacatgcatacgtacatgcatacatatttagtctgttgttaaaaataaaattacattttgaaacTCTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000043131

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040177 True 1525 mRNA 0.35 6 9751117 9755111

Neighbor

gene id symbol gene type direction distance location
XLOC_020200 strip1 coding upstream 213046 9522971 ~ 9538071 (+)
XLOC_020199 cacna2d2b coding upstream 238056 9472814 ~ 9513061 (+)
XLOC_020198 si:ch211-11p18.6 coding upstream 292091 9389801 ~ 9459026 (+)
XLOC_020197 NA coding upstream 367633 9359899 ~ 9383484 (+)
XLOC_020196 BX927329.2 coding upstream 391714 9351372 ~ 9359403 (+)
XLOC_020202 BX664625.6 coding downstream 6819 9761930 ~ 9763971 (+)
XLOC_020203 BX664625.5 coding downstream 9620 9764731 ~ 9768550 (+)
XLOC_020204 BX664625.2 coding downstream 17643 9772754 ~ 9775634 (+)
XLOC_020205 NA coding downstream 27843 9782954 ~ 9791367 (+)
XLOC_020206 si:dkey-102c8.2 coding downstream 38812 9793923 ~ 9795657 (+)
XLOC_020195 NA non-coding upstream 408117 9341455 ~ 9343000 (+)
XLOC_020194 NA non-coding upstream 427300 9322757 ~ 9323817 (+)
XLOC_020189 NA non-coding upstream 684699 9066086 ~ 9066418 (+)
XLOC_020211 NA non-coding downstream 131634 9886745 ~ 9904498 (+)
XLOC_020212 NA non-coding downstream 142860 9897971 ~ 9904623 (+)
XLOC_020216 NA non-coding downstream 234794 9989905 ~ 9991494 (+)
XLOC_020219 NA non-coding downstream 263789 10018900 ~ 10049233 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_08498082_08533503 NA coding CI01000030 null 8497827 ~ 8534156 (-)